make workflow output types optional; addresses #146, #147 (#149)

John Didion · mr-c · web-flow · commit 04477a8f4397 · 2022-01-25T18:03:17.000Z
* validation warning won't be issued anymore

Co-authored-by: Michael R. Crusoe &lt;michael.crusoe@gmail.com&gt;
diff --git a/tests/conditionals/cond-wf-002.cwl b/tests/conditionals/cond-wf-002.cwl
@@ -15,7 +15,7 @@ steps:
 
 outputs:
   out1: 
-    type: string
+    type: string?
     outputSource: step1/out1
 
 requirements: 
diff --git a/tests/conditionals/cond-wf-002_nojs.cwl b/tests/conditionals/cond-wf-002_nojs.cwl
@@ -18,5 +18,5 @@ steps:
 
 outputs:
   out1: 
-    type: string
+    type: string?
     outputSource: step1/out1
diff --git a/tests/conditionals/cond-wf-011.cwl b/tests/conditionals/cond-wf-011.cwl
@@ -26,7 +26,7 @@ outputs:
         type: array
         items:
           type: array
-          items: string
+          items: [string, 'null']
     outputSource: step1/out1
     pickValue: all_non_null
 
diff --git a/tests/conditionals/cond-wf-011_nojs.cwl b/tests/conditionals/cond-wf-011_nojs.cwl
@@ -36,7 +36,7 @@ outputs:
         type: array
         items:
           type: array
-          items: string
+          items: [string, 'null']
     outputSource: step1/out1
     pickValue: all_non_null
 
diff --git a/tests/conditionals/test-index.yaml b/tests/conditionals/test-index.yaml
@@ -23,7 +23,6 @@
 
 - id: cond-3
   label: direct_required
-  doc: Should give validation warning because of required sink
   tool: cond-wf-002.cwl
   job: val.1.job.yaml
   output:
@@ -230,7 +229,6 @@
 
 - id: cond-3_nojs
   label: direct_required_nojs
-  doc: Should give validation warning because of required sink, no javascript
   tool: cond-wf-002_nojs.cwl
   job: val.1.job.yaml
   output:
