ci: add codespell check

Author: mr-c

.github/config/wordlist.txt

@@ -196,7 +196,6 @@ preprocessing
 primitivetype
 processrequirement
 psu
-publically
 pvanheus
 rdf
 rdfs

.github/workflows/spellcheck.yml

@@ -8,14 +8,18 @@ on:
 
 jobs:
   build:
-    # https://github.com/marketplace/actions/github-spellcheck-action
-    # To run locally, `pip install pyspelling`, followed by
-    # `pyspelling -c .github/config/spellcheck.yml`.
     name: Spellcheck
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
+      - name: Codespell with annotations
+        uses: codespell-project/[email protected]
+        with:
+          skip: tests/EDAM.owl,tests/foaf.rdf,tests/underscore.js
       - uses: rojopolis/[email protected]
         name: Spellcheck
+        # https://github.com/marketplace/actions/github-spellcheck-action
+        # To run locally, `pip install pyspelling`, followed by
+        # `pyspelling -c .github/config/spellcheck.yml`.
         with:
           config_path: .github/config/spellcheck.yml

conformance_tests.yaml

@@ -3168,7 +3168,7 @@
 
 - job: tests/empty.json
   tool: tests/params_broken_length_of_non_list.cwl
-  doc: Test paramater reference that refers to length of non-array input
+  doc: Test parameter reference that refers to length of non-array input
   should_fail: true
   tags: [ required, command_line_tool ]
   id: length_for_non_array

tests/revsort-packed.cwl

@@ -19,7 +19,7 @@
                 {
                     "type": "boolean",
                     "default": true,
-                    "doc": "If true, reverse (decending) sort",
+                    "doc": "If true, reverse (descending) sort",
                     "id": "#main/reverse_sort"
                 }
             ],

tests/revsort.cwl

@@ -26,7 +26,7 @@ inputs:
   reverse_sort:
     type: boolean
     default: true
-    doc: "If true, reverse (decending) sort"
+    doc: "If true, reverse (descending) sort"
 
 # The "outputs" array defines the structure of the output object that describes
 # the outputs of the workflow.

tests/sorttool.cwl

@@ -6,7 +6,7 @@ cwlVersion: v1.2
 
 # This example is similar to the previous one, with an additional input
 # parameter called "reverse".  It is a boolean parameter, which is
-# intepreted as a command line flag.  The value of "prefix" is used for
+# interpreted as a command line flag.  The value of "prefix" is used for
 # flag to put on the command line if "reverse" is true, if "reverse" is
 # false, no flag is added.
 #