Fixed missing fsaccess instantiation

Author: mb1069

cwltool/executors.py

@@ -179,7 +179,7 @@ def run_jobs(self,
                             prov_obj = job.prov_obj
                         if prov_obj:
                             runtime_context.prov_obj = prov_obj
-                            runtime_context.research_obj.fsaccess = runtime_context.make_fs_access('')
+                            prov_obj.fsaccess = runtime_context.make_fs_access('')
                             prov_obj.evaluate(
                                 process, job, job_order_object,
                                 runtime_context.research_obj)

cwltool/main.py

@@ -679,6 +679,7 @@ def formatTime(self, record, datefmt=None):
 
             if args.provenance and runtimeContext.research_obj:
                 # Can't really be combined with args.pack at same time
+                runtimeContext.research_obj.fsaccess = getdefault(runtimeContext.make_fs_access, StdFsAccess)
                 runtimeContext.research_obj.packed_workflow(
                     print_pack(loadingContext.loader, processobj, uri, metadata))
 

cwltool/workflow.py

@@ -583,6 +583,7 @@ def job(self,
         if runtimeContext.research_obj is not None:
             if runtimeContext.toplevel:
                 # Record primary-job.json
+                runtimeContext.research_obj.fsaccess = runtimeContext.make_fs_access('')
                 runtimeContext.research_obj.create_job(builder.job, self.job)
 
         job = WorkflowJob(self, runtimeContext)