upgrade to mypy 0.780

Author: mr-c

cwltool/provenance.py

@@ -15,6 +15,7 @@
 from typing import (
     IO,
     Any,
+    BinaryIO,
     Callable,
     Dict,
     Generator,
@@ -427,7 +428,7 @@ def write_bag_file(
             # encoding: match Tag-File-Character-Encoding: UTF-8
             # newline: ensure LF also on Windows
             return TextIOWrapper(
-                cast(IO[bytes], bag_file), encoding=encoding, newline="\n"
+                cast(BinaryIO, bag_file), encoding=encoding, newline="\n"
             )
         return bag_file
 

cwltool/provenance_profile.py

@@ -12,7 +12,7 @@
 from typing_extensions import TYPE_CHECKING
 
 from prov.identifier import Identifier
-from prov.model import PROV, PROV_TYPE, ProvDocument, ProvEntity, PROV_LABEL, PROV_VALUE
+from prov.model import PROV, PROV_LABEL, PROV_TYPE, PROV_VALUE, ProvDocument, ProvEntity
 
 from .errors import WorkflowException
 from .loghandler import _logger

tox.ini

@@ -38,7 +38,7 @@ deps =
   py{35,36,37,38}-unit: galaxy-tool-util
   py{35,36,37,38}-lint: flake8
   py{35,36,37,38}-bandit: bandit
-  py{35,36,37,38}-mypy: mypy==0.770
+  py{35,36,37,38}-mypy: mypy==0.780
 
 setenv =
   py{35,36,37,38}-unit: LC_ALL = C