sort imports

Author: mr-c

cwltool/builder.py

@@ -45,8 +45,8 @@
 )
 
 if TYPE_CHECKING:
-    from .provenance_profile import ProvenanceProfile  # pylint: disable=unused-import
     from .pathmapper import PathMapper
+    from .provenance_profile import ProvenanceProfile  # pylint: disable=unused-import
 
 
 def content_limit_respected_read_bytes(f):  # type: (IO[bytes]) -> bytes

cwltool/command_line_tool.py

@@ -58,6 +58,7 @@
 from .singularity import SingularityCommandLineJob
 from .stdfsaccess import StdFsAccess
 from .udocker import UDockerCommandLineJob
+from .update import ORDERED_VERSIONS
 from .utils import (
     CWLObjectType,
     CWLOutputType,
@@ -79,7 +80,6 @@
     visit_class,
     windows_default_container_id,
 )
-from .update import ORDERED_VERSIONS
 
 if TYPE_CHECKING:
     from .provenance_profile import ProvenanceProfile  # pylint: disable=unused-import

cwltool/context.py

@@ -1,7 +1,7 @@
 """Shared context objects that replace use of kwargs."""
 import copy
 import threading
-from typing import Any, Callable, Dict, Iterable, List, Optional, Union, IO, TextIO
+from typing import IO, Any, Callable, Dict, Iterable, List, Optional, TextIO, Union
 
 # move to a regular typing import when Python 3.3-3.6 is no longer supported
 from ruamel.yaml.comments import CommentedMap

cwltool/cwlrdf.py

@@ -7,8 +7,8 @@
 from schema_salad.jsonld_context import makerdf
 from schema_salad.ref_resolver import ContextType
 
-from .process import Process
 from .cwlviewer import CWLViewer
+from .process import Process
 
 
 def gather(tool: Process, ctx: ContextType) -> Graph:

cwltool/cwlviewer.py

@@ -1,8 +1,9 @@
 """Visualize a CWL workflow."""
-import rdflib
-from urllib.parse import urlparse
 import os
+from urllib.parse import urlparse
+
 import pydot  # type: ignore
+import rdflib
 
 
 class CWLViewer:

cwltool/expression.py

@@ -1,6 +1,7 @@
 """Parse CWL expressions."""
 
 import copy
+import json
 import re
 from typing import (
     Any,
@@ -15,7 +16,6 @@
     cast,
 )
 
-import json
 from schema_salad.utils import json_dumps
 
 from .errors import WorkflowException

cwltool/job.py

@@ -32,12 +32,11 @@
 
 import psutil
 import shellescape
+from prov.model import PROV
 from schema_salad.sourceline import SourceLine
 from schema_salad.utils import json_dump, json_dumps
 from typing_extensions import TYPE_CHECKING
 
-from prov.model import PROV
-
 from .builder import Builder, HasReqsHints
 from .context import RuntimeContext, getdefault
 from .errors import UnsupportedRequirement, WorkflowException

cwltool/main.py

@@ -62,6 +62,7 @@
     resolve_tool_uri,
 )
 from .loghandler import _logger, defaultStreamHandler
+from .mpi import MpiConfig
 from .mutation import MutationManager
 from .pack import pack
 from .process import (
@@ -99,7 +100,6 @@
     windows_default_container_id,
 )
 from .workflow import Workflow
-from .mpi import MpiConfig
 
 
 def _terminate_processes() -> None:

cwltool/mpi.py

@@ -1,9 +1,9 @@
+import inspect
 import os
 import re
-import inspect
-from typing import List, Type, TypeVar, Optional, MutableMapping, Mapping, Union
-from ruamel import yaml
+from typing import List, Mapping, MutableMapping, Optional, Type, TypeVar, Union
 
+from ruamel import yaml
 
 MpiConfigT = TypeVar("MpiConfigT", bound="MpiConfig")
 

cwltool/pack.py

@@ -20,10 +20,10 @@
 
 from .context import LoadingContext
 from .load_tool import fetch_document, resolve_and_validate_document
+from .loghandler import _logger
 from .process import shortname, uniquename
+from .update import ORDERED_VERSIONS, update
 from .utils import CWLObjectType, CWLOutputType
-from .loghandler import _logger
-from .update import update, ORDERED_VERSIONS
 
 LoadRefType = Callable[[Optional[str], str], ResolveType]