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Added loop tests
1 parent 9020ba1 commit a7c77ed

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+567
-152
lines changed

‎tests/loop.cwl

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This file was deleted.

‎tests/loop/all-output-loop.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.2
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class: Workflow
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$namespaces:
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cwltool: "http://commonwl.org/cwltool#"
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requirements:
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InlineJavascriptRequirement: {}
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inputs:
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i1: int
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outputs:
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o1:
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type: int[]
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outputSource: subworkflow/o1
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steps:
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subworkflow:
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run:
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class: ExpressionTool
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inputs:
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i1: int
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outputs:
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o1: int
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expression: >
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${return {'o1': inputs.i1 + 1};}
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in:
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i1: i1
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out: [o1]
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requirements:
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cwltool:Loop:
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loop_when: $(inputs.i1 < 10)
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loop:
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i1: o1
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outputMethod: all

‎tests/loop/invalid-loop-scatter.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.2
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class: Workflow
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$namespaces:
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cwltool: "http://commonwl.org/cwltool#"
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requirements:
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InlineJavascriptRequirement: {}
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ScatterFeatureRequirement: {}
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SubworkflowFeatureRequirement: {}
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inputs:
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i1: int[]
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i2: int
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outputs:
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o1:
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type: int[]
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outputSource: subworkflow/o1
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steps:
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subworkflow:
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run:
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class: ExpressionTool
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inputs:
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i1: int
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i2: int
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outputs:
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o1: int
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expression: >
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${return {'o1': inputs.i1 + inputs.i2};}
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requirements:
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cwltool:Loop:
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loop_when: $(inputs.i1 < 10)
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loop:
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i1: o1
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outputMethod: last
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in:
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i1: i1
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i2: i2
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scatter: i1
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out: [o1]

‎tests/loop/invalid-loop-when.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.2
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class: Workflow
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$namespaces:
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cwltool: "http://commonwl.org/cwltool#"
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requirements:
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InlineJavascriptRequirement: {}
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ScatterFeatureRequirement: {}
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SubworkflowFeatureRequirement: {}
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inputs:
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i1: int
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i2: int
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outputs:
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o1:
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type: int
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outputSource: subworkflow/o1
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steps:
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subworkflow:
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run:
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class: ExpressionTool
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inputs:
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i1: int
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i2: int
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outputs:
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o1: int
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expression: >
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${return {'o1': inputs.i1 + inputs.i2};}
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requirements:
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cwltool:Loop:
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loop_when: $(inputs.i1 < 10)
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loop:
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i1: o1
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outputMethod: last
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in:
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i1: i1
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i2: i2
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when: $(inputs.i2 < 10)
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out: [o1]

‎tests/loop/loop-inside-loop-all.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.2
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class: Workflow
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$namespaces:
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cwltool: "http://commonwl.org/cwltool#"
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requirements:
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InlineJavascriptRequirement: {}
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ScatterFeatureRequirement: {}
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SubworkflowFeatureRequirement: {}
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inputs:
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i1: int
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i2: int
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outputs:
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o1:
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type:
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type: array
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items:
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type: array
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items: int
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outputSource: loop1/o1
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steps:
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loop1:
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run:
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class: Workflow
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inputs:
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i1: int
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i2: int
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outputs:
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o1:
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type: int[]
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outputSource: loop2/o1
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steps:
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loop2:
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run:
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class: ExpressionTool
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inputs:
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i1: int
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i2: int
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outputs:
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o1: int
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expression: >
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${return {'o1': inputs.i1 + 1};}
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in:
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i1: i1
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i2: i2
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out: [o1]
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requirements:
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cwltool:Loop:
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loop_when: $(inputs.i1 <= inputs.i2)
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loop:
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i1: o1
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outputMethod: all
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in:
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i1: i1
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i2: i2
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out: [o1]
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requirements:
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cwltool:Loop:
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loop_when: $(inputs.i2 < 4)
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loop:
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i2:
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valueFrom: $(inputs.i2 + 1)
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outputMethod: all

‎tests/loop/loop-inside-loop.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.2
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class: Workflow
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$namespaces:
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cwltool: "http://commonwl.org/cwltool#"
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requirements:
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InlineJavascriptRequirement: {}
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ScatterFeatureRequirement: {}
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SubworkflowFeatureRequirement: {}
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inputs:
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i1: int
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i2: int
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outputs:
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o1:
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type: int[]
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outputSource: loop1/o1
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steps:
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loop1:
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run:
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class: Workflow
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inputs:
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i1: int
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i2: int
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outputs:
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o1:
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type: int
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outputSource: loop2/o1
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steps:
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loop2:
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run:
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class: ExpressionTool
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inputs:
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i1: int
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i2: int
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outputs:
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o1: int
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expression: >
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${return {'o1': inputs.i1 + 1};}
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in:
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i1: i1
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i2: i2
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out: [o1]
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requirements:
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cwltool:Loop:
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loop_when: $(inputs.i1 <= inputs.i2)
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loop:
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i1: o1
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outputMethod: last
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in:
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i1: i1
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i2: i2
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out: [o1]
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requirements:
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cwltool:Loop:
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loop_when: $(inputs.i2 < 4)
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loop:
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i2:
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valueFrom: $(inputs.i2 + 1)
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outputMethod: all

‎tests/loop/loop-inside-scatter-job.yml

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i1: [1, 2, 3, 4, 5]
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i2: 1

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