better move_outputs default value (#875)

* ensure tmpdir exists

Author: mr-c

Makefile

@@ -61,6 +61,11 @@ install-deb-dep:
 install: FORCE
 	pip install .[deps]
 
+## dev     : install the ${MODULE} module in dev mode
+dev: install-dep
+	pip install -e .[deps]
+
+
 ## dist        : create a module package for distribution
 dist: dist/${MODULE}-$(VERSION).tar.gz
 

cwltool/context.py

@@ -88,7 +88,7 @@ def __init__(self, kwargs=None):
         self.rm_tmpdir = True           # type: bool
         self.pull_image = True          # type: bool
         self.rm_container = True        # type: bool
-        self.move_outputs = ""          # type: Text
+        self.move_outputs = "move"      # type: Text
 
         self.singularity = False        # type: bool
         self.disable_net = None

cwltool/job.py

@@ -374,11 +374,11 @@ def run(self,
             runtimeContext     # type: RuntimeContext
            ):  # type: (...) -> None
 
+        if not os.path.exists(self.tmpdir):
+            os.makedirs(self.tmpdir)
         self._setup(runtimeContext)
 
         env = self.environment
-        if not os.path.exists(self.tmpdir):
-            os.makedirs(self.tmpdir)
         vars_to_preserve = runtimeContext.preserve_environment
         if runtimeContext.preserve_entire_environment:
             vars_to_preserve = os.environ
@@ -427,7 +427,8 @@ def create_runtime(self, env, runtimeContext):
 
     def run(self, runtimeContext):
         # type: (RuntimeContext) -> None
-
+        if not os.path.exists(self.tmpdir):
+            os.makedirs(self.tmpdir)
         (docker_req, docker_is_req) = self.get_requirement("DockerRequirement")
         self.prov_obj = runtimeContext.prov_obj
         img_id = None