Merge pull request #9 from common-workflow-language/repackage

Repackage from org.researchobject to org.commonwl.viewer

Author: MarkRobbo

pom.xml

@@ -3,8 +3,8 @@
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
 
-	<groupId>org.researchobject</groupId>
-	<artifactId>cwlvisualiser</artifactId>
+	<groupId>org.commonwl</groupId>
+	<artifactId>cwlviewer</artifactId>
 	<version>0.0.1-SNAPSHOT</version>
 	<packaging>jar</packaging>
 

src/main/java/org/researchobject/CwlViewerApplication.java renamed to src/main/java/org/commonwl/viewer/CwlViewerApplication.java

@@ -17,7 +17,7 @@
  * under the License.
  */
 
-package org.researchobject;
+package org.commonwl.viewer;
 
 import org.springframework.boot.SpringApplication;
 import org.springframework.boot.autoconfigure.SpringBootApplication;

src/main/java/org/researchobject/domain/CWLCollection.java renamed to src/main/java/org/commonwl/viewer/domain/CWLCollection.java

@@ -17,15 +17,15 @@
  * under the License.
  */
 
-package org.researchobject.domain;
+package org.commonwl.viewer.domain;
 
 import com.fasterxml.jackson.databind.JsonNode;
 import com.fasterxml.jackson.databind.ObjectMapper;
 import com.fasterxml.jackson.databind.node.ArrayNode;
 import com.fasterxml.jackson.databind.node.ObjectNode;
 import com.fasterxml.jackson.databind.node.TextNode;
 import org.eclipse.egit.github.core.RepositoryContents;
-import org.researchobject.services.GitHubService;
+import org.commonwl.viewer.services.GitHubService;
 import org.yaml.snakeyaml.Yaml;
 
 import java.io.IOException;

src/main/java/org/researchobject/domain/CWLElement.java renamed to src/main/java/org/commonwl/viewer/domain/CWLElement.java

@@ -17,7 +17,7 @@
  * under the License.
  */
 
-package org.researchobject.domain;
+package org.commonwl.viewer.domain;
 
 /**
  * Represents the input or output of a workflow/tool

src/main/java/org/researchobject/domain/GithubDetails.java renamed to src/main/java/org/commonwl/viewer/domain/GithubDetails.java

@@ -17,7 +17,7 @@
  * under the License.
  */
 
-package org.researchobject.domain;
+package org.commonwl.viewer.domain;
 
 /**
  * Represents all the parameters necessary to access a file/directory in Github

src/main/java/org/researchobject/domain/ROBundle.java renamed to src/main/java/org/commonwl/viewer/domain/ROBundle.java

@@ -17,15 +17,15 @@
  * under the License.
  */
 
-package org.researchobject.domain;
+package org.commonwl.viewer.domain;
 
 import org.apache.taverna.robundle.Bundle;
 import org.apache.taverna.robundle.Bundles;
 import org.apache.taverna.robundle.manifest.Agent;
 import org.apache.taverna.robundle.manifest.Manifest;
+import org.commonwl.viewer.services.GitHubService;
 import org.eclipse.egit.github.core.RepositoryContents;
 import org.eclipse.egit.github.core.User;
-import org.researchobject.services.GitHubService;
 
 import java.io.IOException;
 import java.net.URI;

src/main/java/org/researchobject/domain/Workflow.java renamed to src/main/java/org/commonwl/viewer/domain/Workflow.java

@@ -17,7 +17,7 @@
  * under the License.
  */
 
-package org.researchobject.domain;
+package org.commonwl.viewer.domain;
 
 import org.springframework.data.annotation.Id;
 import org.springframework.format.annotation.DateTimeFormat;

src/main/java/org/researchobject/domain/WorkflowForm.java renamed to src/main/java/org/commonwl/viewer/domain/WorkflowForm.java

@@ -17,7 +17,7 @@
  * under the License.
  */
 
-package org.researchobject.domain;
+package org.commonwl.viewer.domain;
 
 /**
  * Represents the submission form on the main page to create a new workflow

src/main/java/org/researchobject/services/GitHubService.java renamed to src/main/java/org/commonwl/viewer/services/GitHubService.java

@@ -17,24 +17,23 @@
  * under the License.
  */
 
-package org.researchobject.services;
+package org.commonwl.viewer.services;
 
 import org.apache.commons.io.IOUtils;
+import org.commonwl.viewer.domain.GithubDetails;
 import org.eclipse.egit.github.core.RepositoryContents;
 import org.eclipse.egit.github.core.RepositoryId;
 import org.eclipse.egit.github.core.User;
 import org.eclipse.egit.github.core.client.GitHubClient;
 import org.eclipse.egit.github.core.service.ContentsService;
 import org.eclipse.egit.github.core.service.UserService;
-import org.researchobject.domain.GithubDetails;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.beans.factory.annotation.Value;
 import org.springframework.stereotype.Service;
 
 import java.io.IOException;
 import java.io.InputStream;
 import java.net.URL;
-import java.util.ArrayList;
 import java.util.List;
 import java.util.regex.Matcher;
 import java.util.regex.Pattern;

src/main/java/org/researchobject/services/ROBundleFactory.java renamed to src/main/java/org/commonwl/viewer/services/ROBundleFactory.java

@@ -17,10 +17,10 @@
  * under the License.
  */
 
-package org.researchobject.services;
+package org.commonwl.viewer.services;
 
-import org.researchobject.domain.GithubDetails;
-import org.researchobject.domain.ROBundle;
+import org.commonwl.viewer.domain.GithubDetails;
+import org.commonwl.viewer.domain.ROBundle;
 import org.springframework.beans.factory.annotation.Value;
 import org.springframework.scheduling.annotation.Async;
 import org.springframework.scheduling.annotation.EnableAsync;