Use Java 17 LTS

Author: kinow

.github/workflows/ci-build.yml

@@ -30,7 +30,7 @@ jobs:
         uses: actions/setup-java@v2
         with:
           distribution: 'adopt'
-          java-version: '8'
+          java-version: '17'
 
       - name: Install system packages
         run: |
@@ -45,7 +45,7 @@ jobs:
       - name: Coverage report
         run: |
           mvn prepare-package -DskipTests=true
-          mvn cobertura:cobertura coveralls:report --no-transfer-progress -DrepoToken=$COVERALLS_SECRET -DpullRequest=${{ github.event.number }}
+          mvn jacoco:report coveralls:report --no-transfer-progress -DrepoToken=$COVERALLS_SECRET -DpullRequest=${{ github.event.number }}
         env:
           CI_NAME: github
           COVERALLS_SECRET: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/codeql-analysis.yml

@@ -16,6 +16,12 @@ jobs:
     steps:
     - name: Checkout repository
       uses: actions/checkout@v2
+
+    - name: Set up Java
+      uses: actions/setup-java@v2
+      with:
+        distribution: 'adopt'
+        java-version: '17'
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL

Dockerfile

@@ -1,4 +1,4 @@
-FROM maven:3.6-jdk-8-alpine
+FROM maven:3-eclipse-temurin-17-alpine
 MAINTAINER Stian Soiland-Reyes <[email protected]>
 
 # Build-time metadata as defined at https://github.com/opencontainers/image-spec/blob/main/annotations.md

ISSUE_TEMPLATE.md

@@ -26,4 +26,4 @@
 ## Your Environment
 <!--- Include as many relevant details about the environment you experienced the bug in -->
 * Version used:
-* Environment name and version (e.g. Chrome 39, Java 1.8):
+* Environment name and version (e.g. Chrome 39, Java 17):

README.md

@@ -5,8 +5,6 @@ This is a [Spring Boot](http://projects.spring.io/spring-boot/) MVC application
 [![Build Status](https://github.com/common-workflow-language/cwlviewer/workflows/CWL%20Viewer%20Build/badge.svg?branch=main)](https://github.com/common-workflow-language/cwlviewer/actions?query=workflow%3A%22CWL%20Viewer%20Build%22) [![Coverage Status](https://coveralls.io/repos/github/common-workflow-language/cwlviewer/badge.svg)](https://coveralls.io/github/common-workflow-language/cwlviewer) [![Gitter](https://img.shields.io/gitter/room/gitterHQ/gitter.svg)](https://gitter.im/common-workflow-language/cwlviewer?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge) [![](https://images.microbadger.com/badges/image/commonworkflowlanguage/cwlviewer.svg)](https://microbadger.com/images/commonworkflowlanguage/cwlviewer "MicroBadger commonworkflowlanguage/cwlviewer") [![Docker image commonworkflowlanguage/cwlviewer](https://images.microbadger.com/badges/version/commonworkflowlanguage/cwlviewer.svg)](https://hub.docker.com/r/commonworkflowlanguage/cwlviewer/ "Docker Hub commonworkflowlanguage/cwlviewer")
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.823534.svg)](https://doi.org/10.5281/zenodo.823534)
 
-
-
 # Using CWL Viewer
 
 You are recommended to use the **production instance** of CWL Viewer at https://view.commonwl.org/ which runs the latest [release](https://github.com/common-workflow-language/cwlviewer/releases). Any downtime should be reported on the [gitter chat for cwlviewer](https://gitter.im/common-workflow-language/cwlviewer).
@@ -117,16 +115,16 @@ by default on `localhost:3030`
 
 ## Compiling and Running
 
-To compile you will need [Java 8](http://www.oracle.com/technetwork/java/javase/downloads/index.html) or OpenJDK 8 (`apt install openjdk-8-jdk`),
-as well as [Apache Maven 3](https://maven.apache.org/download.cgi) (`apt install maven`).
+To compile you will need [Java 17](https://www.oracle.com/java/technologies/downloads/) or a compatible distribution
+(e.g. [Eclipse Adoptium](https://projects.eclipse.org/projects/adoptium)) and version, as well as
+[Apache Maven 3](https://maven.apache.org/download.cgi) (`apt install maven`).
 
 Spring Boot uses an embedded HTTP server. The Spring Boot Maven plugin includes a run goal which can be used to quickly compile and run it:
 
 ```
 $ mvn spring-boot:run
 ```
 
-
 Alternatively, you can run the application from your IDE as a simple Java application by importing the Maven project.
 
 You need to install [Graphviz](http://www.graphviz.org/) for all unit tests to pass.
@@ -206,7 +204,6 @@ look like a commit ID. Note that this might break previous permalinks.
 
 2017 Technical Report <https://doi.org/10.5281/zenodo.823295>
 
-
 ## License
 
 Distributed under the [Apache License, Version 2.0](http://www.apache.org/licenses/LICENSE-2.0).
@@ -278,7 +275,7 @@ git push
 Then copy the changelog into https://github.com/common-workflow-language/cwlviewer/releases/new
 using the tag you just pushed.
 
-Finally make a new PR to bump the version and restore the `-SNAPSHOT` suffix in `pom.xml`.
+Finally, make a new PR to bump the version and restore the `-SNAPSHOT` suffix in `pom.xml`.
 
 # Thanks
 

pom.xml

@@ -22,7 +22,7 @@
   <properties>
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
     <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
-    <java.version>1.8</java.version>
+    <java.version>17</java.version>
     <jena.version>4.5.0</jena.version>
     <!-- BEGIN should correspond to https://repo1.maven.org/maven2/org/apache/jena/jena/3.9.0/jena-3.9.0.pom -->
     <ver.jsonldjava>0.13.4</ver.jsonldjava>
@@ -221,20 +221,32 @@
       </activation>
       <build>
         <plugins>
+          <!-- NOTE: We cannot use Cobertura as it is not compatible with Java 11+: https://github.com/mojohaus/cobertura-maven-plugin/issues/43 -->
           <plugin>
-            <groupId>org.codehaus.mojo</groupId>
-            <artifactId>cobertura-maven-plugin</artifactId>
-            <version>2.7</version>
-            <configuration>
-              <formats>
-                <format>xml</format>
-              </formats>
-            </configuration>
+            <groupId>org.jacoco</groupId>
+            <artifactId>jacoco-maven-plugin</artifactId>
+            <version>0.8.8</version>
+            <executions>
+              <execution>
+                <id>prepare-agent</id>
+                <goals>
+                  <goal>prepare-agent</goal>
+                </goals>
+              </execution>
+          </executions>
           </plugin>
           <plugin>
             <groupId>org.eluder.coveralls</groupId>
             <artifactId>coveralls-maven-plugin</artifactId>
             <version>4.3.0</version>
+            <!-- TODO: required class missing: DatatypeConverter when running coverage report, https://github.com/trautonen/coveralls-maven-plugin/issues/141 -->
+            <dependencies>
+              <dependency>
+                <groupId>javax.xml.bind</groupId>
+                <artifactId>jaxb-api</artifactId>
+                <version>2.3.1</version>
+              </dependency>
+            </dependencies>
           </plugin>
         </plugins>
       </build>