Change prefix from /v/git to /view/git

Avoids conflicts with CWL spec versions like https://w3id.org/cwl/v1.0

Author: MarkRobbo

src/main/java/org/commonwl/view/cwl/CWLService.java

@@ -260,7 +260,7 @@ public Workflow parseWorkflowWithCwltool(Workflow basicModel,
         if (!rdfService.graphExists(url)) {
             String rdf = cwlTool.getRDF(localPath);
             rdf = rdf.replace("file://" + workTree.toAbsolutePath().toString(),
-                    "https://w3id.org/cwl/v/git/" + latestCommit);
+                    "https://w3id.org/cwl/view/git/" + latestCommit);
             // Workaround for common-workflow-language/cwltool#427
             rdf = rdf.replace("<rdfs:>", "<http://www.w3.org/2000/01/rdf-schema#>");
 

src/main/java/org/commonwl/view/researchobject/ROBundleService.java

@@ -249,7 +249,7 @@ private void addFilesToBundle(GitDetails gitDetails, Bundle bundle, Path bundleP
                         Path gitPath = Paths.get(gitDetails.getPath()).resolve(file.getName());
 
                         // Get direct URL permalink
-                        URI rawURI = new URI("https://w3id.org/cwl/v/git/" + workflow.getLastCommit() +
+                        URI rawURI = new URI("https://w3id.org/cwl/view/git/" + workflow.getLastCommit() +
                                 "/" + gitPath + "?format=raw");
 
                         // Variable to store file contents and aggregation

src/main/java/org/commonwl/view/workflow/Workflow.java

@@ -215,7 +215,7 @@ public String getRoBundleLink() {
     public String getPermalink(String format) {
         String formatPart = (format != null && !format.isEmpty()) ? "?format=" + format : "";
         String packedPart = (retrievedFrom.getPackedId() != null) ? "#" + retrievedFrom.getPackedId() : "";
-        return "https://w3id.org/cwl/v/git/" + lastCommit +
+        return "https://w3id.org/cwl/view/git/" + lastCommit +
                 "/" + retrievedFrom.getPath() + formatPart + packedPart;
     }
 

src/test/java/org/commonwl/view/researchobject/ROBundleServiceTest.java

@@ -145,7 +145,7 @@ public void generateAndSaveROBundle() throws Exception {
         // Check cwl aggregation information
         PathMetadata cwlAggregate = manifest.getAggregation(
                 bundleRoot.resolve("lobSTR-workflow.cwl"));
-        assertEquals("https://w3id.org/cwl/v/git/null/lobstr-draft3/lobSTR-workflow.cwl?format=raw",
+        assertEquals("https://w3id.org/cwl/view/git/null/lobstr-draft3/lobSTR-workflow.cwl?format=raw",
                 cwlAggregate.getRetrievedFrom().toString());
         assertEquals("Mark Robinson", cwlAggregate.getAuthoredBy().get(0).getName());
         assertEquals("mailto:[email protected]", cwlAggregate.getAuthoredBy().get(0).getUri().toString());
@@ -209,7 +209,7 @@ public void filesOverLimit() throws Exception {
         assertEquals(14, manifest.getAggregates().size());
 
         PathMetadata urlAggregate = manifest.getAggregation(
-                new URI("https://w3id.org/cwl/v/git/null/lobstr-draft3/models/illumina_v3.pcrfree.stepmodel?format=raw"));
+                new URI("https://w3id.org/cwl/view/git/null/lobstr-draft3/models/illumina_v3.pcrfree.stepmodel?format=raw"));
         assertEquals("Mark Robinson", urlAggregate.getAuthoredBy().get(0).getName());
 
     }