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Clarify file names and fix formatting and typos (#235)
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src/_includes/cwl/23-scatter-workflow/scatter-nested-workflow.cwl

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@@ -19,7 +19,7 @@ steps:
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outputs: []
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steps:
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echo:
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run: 1st-tool-mod.cwl
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run: hello_world_to_stdout.cwl
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in:
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message: message
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out: [echo_out]

src/_includes/cwl/23-scatter-workflow/scatter-two-steps.cwl

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@@ -11,7 +11,7 @@ inputs:
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steps:
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echo:
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run: 1st-tool-mod.cwl
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run: hello_world_to_stdout.cwl
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scatter: message
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in:
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message: message_array

src/_includes/cwl/23-scatter-workflow/scatter-workflow.cwl

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@@ -11,7 +11,7 @@ inputs:
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steps:
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echo:
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run: 1st-tool.cwl
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run: hello_world.cwl
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scatter: message
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in:
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message: message_array

src/topics/workflows.md

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@@ -89,7 +89,6 @@ the `echo-uppercase.cwl` workflow as a single file:
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% :name: echo-uppercase-single-file.cwl
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```{code-block} cwl
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:caption: "`echo-uppercase-single-file.cwl`"
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cwlVersion: v1.2
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class: Workflow
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```
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The most common reason a new user might want to use scatter is to perform the same analysis on
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different samples. Let's start with a simple workflow that calls our first example and takes
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an array of strings as input to the workflow:
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different samples. Let's start with a simple workflow that calls our first example
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(`hello_world.cwl`) and takes an array of strings as input to the workflow:
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```{literalinclude} /_includes/cwl/23-scatter-workflow/scatter-workflow.cwl
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:language: cwl
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lines instead of `outputs: []`
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```{code-block} cwl
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:caption: "`hello_world.cwl*"
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:name: hello_world.cwl*
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:caption: "`hello_world_to_stdout.cwl`"
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:name: hello_world_to_stdout.cwl
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outputs:
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echo_out:
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type: stdout

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