Support --tmp-outdir-prefix

Author: Peter Amstutz

cwltool_service.py

@@ -16,6 +16,9 @@ def main(args=None):
         print "Workflow must be on command line"
         return 1
 
+    parser = cwltool.main.arg_parser()
+    parsedargs = parser.parse_args(args)
+
     a = True
     while a:
         a = True
@@ -24,10 +27,12 @@ def main(args=None):
             a = sys.stdin.readline()
             msg += a
 
+        outdir = tempfile.mkdtemp("", parsedargs.tmp_outdir_prefix)
+
         t = tempfile.NamedTemporaryFile()
         t.write(msg)
         t.flush()
-        if cwltool.main.main([args[0], t.name]) != 0:
+        if cwltool.main.main(["--outdir="+outdir] + args + [t.name]) != 0:
             return 1
         sys.stdout.write("\n\n")
 

setup.py

@@ -24,7 +24,7 @@
           'cwltool'
         ],
       entry_points={
-          'console_scripts': [ "cwltool-service=cwl_service:main" ]
+          'console_scripts': [ "cwltool-service=cwltool_service:main" ]
       },
       zip_safe=True
 )