Merge branch 'main' into triangulation_earclip

Author: petrasvestartas

CHANGELOG.md

@@ -37,6 +37,27 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * Added `compas.data.Data.to_jsonstring` and `compas.data.Data.from_jsonstring`.
 * Added `compas.data.Data.attributes`.
 * Added optional param `working_directory` to `compas.rpc.Proxy` to be able to start services defined in random locations.
+* Added `compas.datastructures.Datastructure.transform` and `compas.datastructures.Datastructure.transformed`.
+* Added `compas.datastructures.Datastructure.transform_numpy` and `compas.datastructures.Datastructure.transformed_numpy`.
+* Added `compas.datastructures.Halfedge.flip_cycles`.
+* Added `compas.datastructures.Halfedge.is_connected`, `compas.datastructures.Halfedge.connected_vertices`, `compas.datastructures.Halfedge.connected_faces`.
+* Added `compas.datastructures.Mesh.join`.
+* Added `compas.datastructures.Mesh.weld` and `compas.datastructures.Mesh.remove_duplicate_vertices`.
+* Added `compas.datastructures.Mesh.quads_to_triangles`.
+* Added `compas.datastructures.Mesh.unify_cycles`.
+* Added `compas.datastructures.Mesh.aabb` and `compas.datastructures.Mesh.obb`.
+* Added `compas.datastructures.Mesh.offset` and `compas.datastructures.Mesh.thickened`.
+* Added `compas.datastructures.Mesh.exploded`.
+* Added `compas.datastructures.Mesh.adjacency_matrix`, `compas.datastructures.Mesh.connectivity_matrix`, `compas.datastructures.Mesh.degree_matrix`, `compas.datastructures.Mesh.laplacian_matrix`.
+* Added `compas.topology.vertex_adjacency_from_edges`, `compas.topology.vertex_adjacency_from_faces`, `compas.topology.edges_from_faces`, `compas.topology.faces_from_edges`.
+* Added `compas.datastructures.Network.split_edge`, `compas.datastructures.Network.join_edges`.
+* Added `compas.datastructures.Network.smooth`.
+* Added `compas.datastructures.Network.is_crossed`, `compas.datastructures.Network.is_xy`, `compas.datastructures.Network.is_planar`, `compas.datastructures.Network.is_planar_embedding`, `compas.datastructures.Network.count_crossings`, `compas.datastructures.Network.find_crossings`, `compas.datastructures.Network.embed_in_plane`.
+* Added `compas.datastructures.Network.find_cycles`.
+* Added `compas.datastructures.Network.shortest_path`.
+* Added `compas.datastructures.Network.transform`.
+* Added `compas.datastructures.Graph.is_connected`.
+* Added `compas.datastructures.Graph.adjacency_matrix`, `compas.datastructures.Graph.connectivity_matrix`, `compas.datastructures.Graph.degree_matrix`, `compas.datastructures.Graph.laplacian_matrix`.
 
 ### Changed
 
@@ -55,6 +76,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * Changed `compas.datastructures.Mesh` to take additional `**kwargs`, instead of only `name=None` specifically.
 * Moved registration of `ping` and `remote_shutdown` of the RPC server to `compas.rpc.Server.__init__()`.
 * Moved `FileWatcherService` to `compas.rpc.services.watcher` so it can be reused.
+* Changed `compas.datastructures.Mesh.subdivide` to `compas.datastructures.Mesh.subdivided`.
+* Moved `compas.numerical.pca_numpy` to `compas.geometry.pca_numpy`.
+* Moved `compas.numerical.scalafield_contours` to `compas.geometry.scalarfield_contours`.
+* Moved `compas.numerical.matrices` to `compas.topology.matrices`.
+* Moved `compas.numerical.linalg` to `compas.geometry.linalg`.
+* Changed `watchdog` dependency to be only required for platforms other than `emscripten`.
 * Changed `compas.geometry.earclip_polygon` algorithm because the current one does not work in several cases.
 * Changed the docstrings in `compas.geometry.earclip_polygon` are corrected. The orientation to the XY Frame has been removed since it is handled by the `polygon.to_vertices_and_faces` method. Additionally, the test_polygon.py file has been modified with a new test for the ear_clip called `test_polygon_to_vertices_and_faces`. The `object` has been added to all `Ear` classes.
 * Changed the docstrings in `compas.geometry.earclip_polygon` is merged back, meaning the polygon is transformed to XY frame.
@@ -67,6 +94,32 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * Removed `attributes` from `compas.datastructures.Network.data`.
 * Removed `attributes` from `compas.datastructures.Halfedge.data`.
 * Removed `attributes` from `compas.datastructures.Mesh.data`.
+* Removed `compas.datastructures.mesh_bounding_box` and `compas.datastructures.mesh_bounding_box_xy`.
+* Removed `compas.datastructures.mesh_oriented_bounding_box_numpy` and `compas.datastructures.mesh_oriented_bounding_box_xy_numpy`.
+* Removed `compas.datastructures.mesh_delete_duplicate_vertices`.
+* Removed `compas.datastructures.mesh_is_connected` and `compas.datastructures.mesh_connected_components`.
+* Removed `compas.datastructures.mesh_isolines_numpy` and `compas.datastructures.mesh_contours_numpy`.
+* Removed `compas.datastructures.trimesh_gaussian_curvature`.
+* Removed `compas.datastructures.trimesh_descent`.
+* Removed `compas.datastructures.mesh_disconnected_vertices`, `compas.datastructures.mesh_disconnected_faces` and `compas.datastructures.mesh_explode`.
+* Removed `compas.datastructures.mesh_geodesic_distances_numpy`.
+* Removed `compas.datastructures.trimesh_face_circle`.
+* Removed `compas.datastructures.mesh_weld`, `compas.datastructures.meshes_join`, `compas.datastructures.meshes_join_and_weld`.
+* Removed `compas.datastructures.mesh_offset` and `compas.datastructures.mesh_thicken`.
+* Removed `compas.datastructures.mesh_face_adjacency` and `compas.datastructures.mesh_unify_cycles`.
+* Removed `compas.datastructures.mesh_transform`, `compas.datastructures.mesh_transformed`, `compas.datastructures.mesh_transform_numpy`, `compas.datastructures.mesh_transformed_numpy`.
+* Removed `compas.datastructures.mesh_quads_to_triangles`.
+* Removed `compas.datastructures.volmesh_bounding_box`.
+* Removed `compas.datastructures.volmesh_transform` and `compas.datastructures.volmesh_transformed`.
+* Removed `compas.topology.unify_cycles_numpy` and `compas.topology.face_adjacency_numpy`.
+* Removed `compas.topology.unify_cycles_rhino` and `compas.topology.face_adjacency_rhino`.
+* Removed `compas.datastructures.network_is_connected`.
+* Removed `compas.datastructures.network_complement`.
+* Removed `compas.datastructures.network_disconnected_nodes`, `compas.datastructures.network_disconnected_edges`, `compas.datastructures.network_explode`.
+* Removed `compas.datastructures.network_adjacency_matrix`, `compas.datastructures.network_connectivity_matrix`, `compas.datastructures.network_degree_matrix`, `compas.datastructures.network_laplacian_matrix`.
+* Removed `compas.datastructures.network_transform`, `compas.datastructures.network_transformed`.
+* Removed `compas.datastructures.network_shortest_path`.
+* Removed `compas.numerical`.
 
 ## [2.0.0-beta.1] 2023-12-20
 

docs/api/compas.datastructures.Mesh.rst

@@ -0,0 +1,293 @@
+******************************************************************************
+Mesh
+******************************************************************************
+
+.. currentmodule:: compas.datastructures
+
+.. autoclass:: Mesh
+
+Methods
+=======
+
+Constructors
+------------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.from_json
+    ~Mesh.from_lines
+    ~Mesh.from_meshgrid
+    ~Mesh.from_obj
+    ~Mesh.from_off
+    ~Mesh.from_ply
+    ~Mesh.from_points
+    ~Mesh.from_polygons
+    ~Mesh.from_polyhedron
+    ~Mesh.from_polylines
+    ~Mesh.from_shape
+    ~Mesh.from_stl
+    ~Mesh.from_vertices_and_faces
+
+Conversions
+-----------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.to_json
+    ~Mesh.to_lines
+    ~Mesh.to_obj
+    ~Mesh.to_off
+    ~Mesh.to_ply
+    ~Mesh.to_points
+    ~Mesh.to_polygons
+    ~Mesh.to_polylines
+    ~Mesh.to_stl
+    ~Mesh.to_vertices_and_faces
+
+Builders and Modifiers
+----------------------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.add_face
+    ~Mesh.add_vertex
+    ~Mesh.collapse_edge
+    ~Mesh.delete_face
+    ~Mesh.delete_vertex
+    ~Mesh.flip_cycles
+    ~Mesh.insert_vertex
+    ~Mesh.join
+    ~Mesh.merge_faces
+    ~Mesh.quads_to_triangles
+    ~Mesh.remove_duplicate_vertices
+    ~Mesh.remove_unused_vertices
+    ~Mesh.split_edge
+    ~Mesh.split_face
+    ~Mesh.unify_cycles
+    ~Mesh.unweld_edges
+    ~Mesh.unweld_vertices
+    ~Mesh.weld
+
+Accessors
+---------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.edge_sample
+    ~Mesh.edges
+    ~Mesh.edges_on_boundaries
+    ~Mesh.edges_on_boundary
+    ~Mesh.edges_where
+    ~Mesh.edges_where_predicate
+    ~Mesh.face_sample
+    ~Mesh.faces
+    ~Mesh.faces_on_boundaries
+    ~Mesh.faces_on_boundary
+    ~Mesh.faces_where
+    ~Mesh.faces_where_predicate
+    ~Mesh.vertex_sample
+    ~Mesh.vertices
+    ~Mesh.vertices_on_boundaries
+    ~Mesh.vertices_on_boundary
+    ~Mesh.vertices_where
+    ~Mesh.vertices_where_predicate
+
+Attributes
+----------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.edge_attribute
+    ~Mesh.edge_attributes
+    ~Mesh.edges_attribute
+    ~Mesh.edges_attributes
+    ~Mesh.face_attribute
+    ~Mesh.face_attributes
+    ~Mesh.faces_attribute
+    ~Mesh.faces_attributes
+    ~Mesh.vertex_attribute
+    ~Mesh.vertex_attributes
+    ~Mesh.vertices_attribute
+    ~Mesh.vertices_attributes
+    ~Mesh.update_default_edge_attributes
+    ~Mesh.update_default_face_attributes
+    ~Mesh.update_default_vertex_attributes
+    ~Mesh.unset_edge_attribute
+    ~Mesh.unset_face_attribute
+    ~Mesh.unset_vertex_attribute
+
+Topology
+--------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.connected_vertices
+    ~Mesh.connected_faces
+    ~Mesh.edge_faces
+    ~Mesh.edge_loop
+    ~Mesh.edge_strip
+    ~Mesh.euler
+    ~Mesh.face_adjacency_halfedge
+    ~Mesh.face_adjacency_vertices
+    ~Mesh.face_corners
+    ~Mesh.face_degree
+    ~Mesh.face_halfedges
+    ~Mesh.face_max_degree
+    ~Mesh.face_min_degree
+    ~Mesh.face_neighbors
+    ~Mesh.face_neighborhood
+    ~Mesh.face_vertex_ancestor
+    ~Mesh.face_vertex_descendant
+    ~Mesh.face_vertices
+    ~Mesh.halfedge_after
+    ~Mesh.halfedge_before
+    ~Mesh.halfedge_face
+    ~Mesh.halfedge_loop
+    ~Mesh.halfedge_loop_vertices
+    ~Mesh.halfedge_strip
+    ~Mesh.halfedge_strip_faces
+    ~Mesh.has_edge
+    ~Mesh.has_face
+    ~Mesh.has_halfedge
+    ~Mesh.has_vertex
+    ~Mesh.is_closed
+    ~Mesh.is_connected
+    ~Mesh.is_edge_on_boundary
+    ~Mesh.is_empty
+    ~Mesh.is_face_on_boundary
+    ~Mesh.is_manifold
+    ~Mesh.is_orientable
+    ~Mesh.is_quadmesh
+    ~Mesh.is_regular
+    ~Mesh.is_trimesh
+    ~Mesh.is_valid
+    ~Mesh.is_vertex_connected
+    ~Mesh.is_vertex_on_boundary
+    ~Mesh.number_of_edges
+    ~Mesh.number_of_faces
+    ~Mesh.number_of_vertices
+    ~Mesh.vertex_degree
+    ~Mesh.vertex_edges
+    ~Mesh.vertex_faces
+    ~Mesh.vertex_max_degree
+    ~Mesh.vertex_min_degree
+    ~Mesh.vertex_neighbors
+    ~Mesh.vertex_neighborhood
+
+Geometry
+--------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.aabb
+    ~Mesh.area
+    ~Mesh.centroid
+    ~Mesh.edge_coordinates
+    ~Mesh.edge_direction
+    ~Mesh.edge_end
+    ~Mesh.edge_length
+    ~Mesh.edge_line
+    ~Mesh.edge_midpoint
+    ~Mesh.edge_point
+    ~Mesh.edge_start
+    ~Mesh.edge_vector
+    ~Mesh.face_area
+    ~Mesh.face_aspect_ratio
+    ~Mesh.face_center
+    ~Mesh.face_centroid
+    ~Mesh.face_circle
+    ~Mesh.face_coordinates
+    ~Mesh.face_curvature
+    ~Mesh.face_flatness
+    ~Mesh.face_frame
+    ~Mesh.face_normal
+    ~Mesh.face_plane
+    ~Mesh.face_points
+    ~Mesh.face_polygon
+    ~Mesh.face_skewness
+    ~Mesh.normal
+    ~Mesh.obb
+    ~Mesh.vertex_area
+    ~Mesh.vertex_coordinates
+    ~Mesh.vertex_curvature
+    ~Mesh.vertex_point
+    ~Mesh.vertex_laplacian
+    ~Mesh.vertex_neighborhood_centroid
+    ~Mesh.vertex_normal
+    ~Mesh.vertices_points
+    ~Mesh.set_vertex_point
+    ~Mesh.smooth_area
+    ~Mesh.smooth_centroid
+    ~Mesh.transform
+    ~Mesh.transformed
+
+Paths
+-----
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+
+Matrices
+--------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.adjacency_matrix
+    ~Mesh.connectivity_matrix
+    ~Mesh.degree_matrix
+    ~Mesh.face_matrix
+    ~Mesh.laplacian_matrix
+
+Mappings
+--------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.gkey_vertex
+    ~Mesh.vertex_gkey
+    ~Mesh.vertex_index
+    ~Mesh.index_vertex
+
+Utilities
+---------
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.summary
+    ~Mesh.copy
+    ~Mesh.clear
+
+Other
+-----
+
+.. autosummary::
+    :toctree: generated/
+    :nosignatures:
+
+    ~Mesh.dual
+    ~Mesh.exploded
+    ~Mesh.offset
+    ~Mesh.subdivided
+    ~Mesh.thickened