go mod updates, all sims now embedded directly using element handlers instead of yaegi. faster it seems.

Author: rcoreilly

.github/workflows/core.yml

@@ -37,7 +37,7 @@ jobs:
       - name: Install Go
         uses: actions/setup-go@v5
         with:
-          go-version: '1.25.1'
+          go-version: '1.25.6'
 
       - name: Install Core
         run: go install cogentcore.org/core@main

content/bg-dorsal-simulation.md

@@ -4,11 +4,7 @@ Categories = ["Rubicon", "Simulations"]
 bibfile = "ccnlab.json"
 +++
 
-{id="sim_bg" collapsed="true"}
-```Goal
-// see https://github.com/emer/axon/tree/main/sims/bgdorsal for source code
-bgdorsal.Embed(b)
-```
+<sim-bgdorsal>
 
 <div>
 

content/bg-ventral-simulation.md

@@ -4,11 +4,7 @@ Categories = ["Rubicon", "Simulations"]
 bibfile = "ccnlab.json"
 +++
 
-{id="sim_vmbg" collapsed="true"}
-```Goal
-// see https://github.com/emer/axon/tree/main/sims/bgventral for source code
-bgventral.Embed(b)
-```
+<sim-bgventral>
 
 <div>
 

content/fsa-simulation.md

@@ -4,11 +4,7 @@ Name = "FSA simulation"
 bibfile = "ccnlab.json"
 +++
 
-{id="sim_fsa" collapsed="true"}
-```Goal
-// see https://github.com/emer/axon/tree/main/sims/deepfsa for source code
-deepfsa.Embed(b)
-```
+<sim-deepfsa>
 
 <div>
 

content/inhibition-simulation.md

@@ -3,11 +3,7 @@ Categories = ["Activation", "Simulations"]
 bibfile = "ccnlab.json"
 +++
 
-{id="sim_inhib" collapsed="true"}
-```Goal
-// see https://github.com/emer/axon/tree/main/sims/inhib for source code
-inhib.Embed(b)
-```
+<sim-inhib>
 
 <div>
 

content/neuron-simulation.md

@@ -3,11 +3,7 @@ Categories = ["Activation", "Simulations"]
 bibfile = "ccnlab.json"
 +++
 
-{id="sim_stability" collapsed="true"}
-```Goal
-// see https://github.com/compcogneuro/web/sims/stability for source code
-stability.Embed(b)
-```
+<sim-stability>
 
 <div>
 

content/stable-activation.md

@@ -3,11 +3,7 @@ Categories = ["Activation", "Simulations", "Neuroscience"]
 bibfile = "ccnlab.json"
 +++
 
-{id="sim_neuron" collapsed="true"}
-```Goal
-// see https://github.com/compcogneuro/web/sims/urakubo for source code
-urakubo.Embed(b)
-```
+<sim-urakubo>
 
 <div>
 

content/urakubo08-simulation.md

@@ -1,39 +1,40 @@
 module github.com/compcogneuro/web
 
-go 1.23.4
+go 1.25.6
 
 require (
-	cogentcore.org/core v0.3.13
-	cogentcore.org/lab v0.1.3-0.20260114211409-7a11751d0716
-	github.com/cogentcore/yaegi v0.0.0-20250622201820-b7838bdd95eb
-	github.com/emer/axon/v2 v2.0.0-dev0.2.87
-	github.com/emer/emergent/v2 v2.0.0-dev0.1.7.0.20260112164245-4090cb871bf0
+	cogentcore.org/core v0.3.14-0.20260117204258-0df48929cf7e
+	cogentcore.org/lab v0.1.3-0.20260118025330-40dd4638d88a
+	github.com/cogentcore/yaegi v0.0.0-20260116172027-700fbf8949f3
+	github.com/emer/axon/v2 v2.0.0-dev0.2.88
+	github.com/emer/emergent/v2 v2.0.0-dev0.1.7.0.20260118035849-68022169e155
 )
 
 require (
+	codeberg.org/go-pdf/fpdf v0.11.0 // indirect
 	github.com/Bios-Marcel/wastebasket/v2 v2.0.3 // indirect
 	github.com/Masterminds/vcs v1.13.3 // indirect
 	github.com/adrg/strutil v0.3.1 // indirect
-	github.com/alecthomas/chroma/v2 v2.13.0 // indirect
-	github.com/anthonynsimon/bild v0.13.0 // indirect
+	github.com/alecthomas/chroma/v2 v2.23.0 // indirect
+	github.com/anthonynsimon/bild v0.14.0 // indirect
 	github.com/aymanbagabas/go-osc52/v2 v2.0.1 // indirect
 	github.com/aymerick/douceur v0.2.0 // indirect
-	github.com/bramvdbogaerde/go-scp v1.4.0 // indirect
-	github.com/chewxy/math32 v1.10.1 // indirect
+	github.com/bramvdbogaerde/go-scp v1.6.0 // indirect
+	github.com/chewxy/math32 v1.11.1 // indirect
 	github.com/cogentcore/readline v0.1.3 // indirect
 	github.com/cogentcore/webgpu v0.23.0 // indirect
-	github.com/dlclark/regexp2 v1.11.0 // indirect
-	github.com/ericchiang/css v1.3.0 // indirect
-	github.com/fsnotify/fsnotify v1.8.0 // indirect
+	github.com/dlclark/regexp2 v1.11.5 // indirect
+	github.com/ericchiang/css v1.4.0 // indirect
+	github.com/fsnotify/fsnotify v1.9.0 // indirect
 	github.com/go-fonts/latin-modern v0.3.3 // indirect
-	github.com/go-gl/glfw/v3.3/glfw v0.0.0-20240506104042-037f3cc74f2a // indirect
-	github.com/go-text/typesetting v0.3.1-0.20250402122313-7a0f05577ff5 // indirect
+	github.com/go-gl/glfw/v3.3/glfw v0.0.0-20250301202403-da16c1255728 // indirect
+	github.com/go-text/typesetting v0.3.1-0.20250707124828-58cd3ef91251 // indirect
 	github.com/gobwas/glob v0.2.3 // indirect
-	github.com/gomarkdown/markdown v0.0.0-20250311123330-531bef5e742b // indirect
+	github.com/gomarkdown/markdown v0.0.0-20250810172220-2e2c11897d1a // indirect
 	github.com/gorilla/css v1.0.1 // indirect
 	github.com/h2non/filetype v1.1.3 // indirect
 	github.com/hack-pad/go-indexeddb v0.3.2 // indirect
-	github.com/hack-pad/hackpadfs v0.2.1 // indirect
+	github.com/hack-pad/hackpadfs v0.2.4 // indirect
 	github.com/hack-pad/safejs v0.1.1 // indirect
 	github.com/jeandeaual/go-locale v0.0.0-20250612000132-0ef82f21eade // indirect
 	github.com/jinzhu/copier v0.4.0 // indirect
@@ -42,20 +43,20 @@ require (
 	github.com/mattn/go-shellwords v1.0.12 // indirect
 	github.com/mitchellh/go-homedir v1.1.0 // indirect
 	github.com/muesli/termenv v0.16.0 // indirect
-	github.com/pelletier/go-toml/v2 v2.1.2-0.20240227203013-2b69615b5d55 // indirect
+	github.com/pelletier/go-toml/v2 v2.2.4 // indirect
 	github.com/rivo/uniseg v0.4.7 // indirect
-	github.com/tdewolff/parse/v2 v2.7.19 // indirect
-	golang.org/x/crypto v0.40.0 // indirect
-	golang.org/x/exp v0.0.0-20240823005443-9b4947da3948 // indirect
-	golang.org/x/image v0.25.0 // indirect
-	golang.org/x/mod v0.25.0 // indirect
-	golang.org/x/net v0.42.0 // indirect
-	golang.org/x/sync v0.16.0 // indirect
-	golang.org/x/sys v0.34.0 // indirect
-	golang.org/x/text v0.27.0 // indirect
-	golang.org/x/tools v0.34.0 // indirect
-	gonum.org/v1/gonum v0.15.0 // indirect
+	github.com/tdewolff/parse/v2 v2.8.5 // indirect
+	golang.org/x/crypto v0.47.0 // indirect
+	golang.org/x/exp v0.0.0-20260112195511-716be5621a96 // indirect
+	golang.org/x/image v0.35.0 // indirect
+	golang.org/x/mod v0.32.0 // indirect
+	golang.org/x/net v0.49.0 // indirect
+	golang.org/x/sync v0.19.0 // indirect
+	golang.org/x/sys v0.40.0 // indirect
+	golang.org/x/text v0.33.0 // indirect
+	golang.org/x/tools v0.41.0 // indirect
+	gonum.org/v1/gonum v0.17.0 // indirect
 	modernc.org/knuth v0.5.4 // indirect
 	modernc.org/token v1.1.0 // indirect
-	star-tex.org/x/tex v0.6.0 // indirect
+	star-tex.org/x/tex v0.7.1 // indirect
 )