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237 | 237 | with validation of previous GeneROOT benchmarks showing 4x performance gains |
238 | 238 | with TTree, we will then extend these capabilities with RNTuple technology. |
239 | 239 | Genomic sequencing data volumes are growing exponentially, creating performance |
240 | | - bottlenecks in traditional formats. RNTuple's improved memory mapping, type |
| 240 | + bottlenecks in traditional formats.RNTuple's improved memory mapping, type |
241 | 241 | safety through templated interfaces, and parallelization capabilities position |
242 | 242 | it as an ideal solution. |
243 | 243 | We will systematically compare compression algorithms, implement file splitting |
244 | | - strategies, and benchmark against established formats. Additionally, I will |
| 244 | + strategies, and benchmark against established formats.Additionally, I will |
245 | 245 | analyze the latest compression strategies implemented by samtools and incorporate |
246 | 246 | these techniques into the project to ensure comprehensive coverage of state-of-the-art |
247 | 247 | genomic data compression approaches. |
248 | 248 | The project will deliver optimized tools for handling rapidly growing genomic datasets, |
249 | 249 | potentially establishing a new standard for high-performance genomic data analysis. |
250 | 250 | proposal: /assets/docs/Aditya_Pandey_GSoC2025.pdf |
251 | | - mentors: Martin Vassilev, Jonas Rembser, Fons Rademakers |
| 251 | + mentors: Martin Vassilev, Jonas Rembser, Fons Rademakers, Vassil Vassilev |
252 | 252 |
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253 | 253 | - name: "This could be you!" |
254 | 254 | photo: rock.jpg |
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