Update test

Author: constantinpape

flamingo_tools/data_conversion.py

@@ -232,7 +232,7 @@ def convert_lightsheet_to_bdv(
         # Read the metadata if it was given.
         if metadata_file is None:  # No metadata given.
             # We don't use any tile transformation.
-            tile_transformation = [None]
+            tile_transformation = None
             # Set resolution and unit to their default values if they were not passed.
             if resolution is None:
                 resolution = [1.0, 1.0, 1.0]

flamingo_tools/test_data.py

@@ -7,7 +7,7 @@
 # TODO add metadata
 def create_test_data(root, size=256, n_channels=2, n_tiles=4):
     channel_folders = [f"channel{chan_id}" for chan_id in range(n_channels)]
-    file_name_pattern = "volume_R%i_C%i.tif"
+    file_name_pattern = "volume_R%i_C%i_I0.tif"
     for chan_id, channel_folder in enumerate(channel_folders):
         out_folder = os.path.join(root, channel_folder)
         os.makedirs(out_folder, exist_ok=True)

test/test_data_conversion.py

@@ -22,16 +22,7 @@ def test_convert_lightsheet_to_bdv(self):
         from flamingo_tools import convert_lightsheet_to_bdv
 
         out_path = os.path.join(self.folder, "converted_data.n5")
-
-        channel_folders = {
-            "channel0": "channel0",
-            "channel1": "channel1",
-        }
-        convert_lightsheet_to_bdv(
-            self.folder, channel_folders,
-            image_file_name_pattern="volume_R*.tif",
-            out_path=out_path
-        )
+        convert_lightsheet_to_bdv(self.folder, out_path=out_path)
 
         self.assertTrue(os.path.exists(out_path))
         xml_path = out_path.replace(".n5", ".xml")