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Add processing workflow summary
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# Segmentation and detection workflows
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Implements workflows to segment SGNs or IHCs, and to detect ribbon synapses in slurm.
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For SGN segmentation run:
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- mean_std_SGN_template.sbatch
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- apply_unet_SGN_template.sbatch
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- segment_unet_SGN_template.sbatch
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For IHC segmentation run:
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- mean_std_IHC_template.sbatch
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- apply_unet_IHC_template.sbatch
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- segment_unet_IHC_template.sbatch
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For ribbon synapse detection run:
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- detect_synapse_marker_template.sbatch
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- detect_synapse_template.sbatch

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