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reproducibility/templates_processing/REAMDE.md
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+# Segmentation and detection workflows
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+
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+Implements workflows to segment SGNs or IHCs, and to detect ribbon synapses in slurm.
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+For SGN segmentation run:
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+- mean_std_SGN_template.sbatch
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+- apply_unet_SGN_template.sbatch
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+- segment_unet_SGN_template.sbatch
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+For IHC segmentation run:
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+- mean_std_IHC_template.sbatch
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+- apply_unet_IHC_template.sbatch
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+- segment_unet_IHC_template.sbatch
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+For ribbon synapse detection run:
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+- detect_synapse_marker_template.sbatch
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+- detect_synapse_template.sbatch
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