Fix filter default

Author: schilling40

flamingo_tools/segmentation/cochlea_mapping.py

@@ -67,7 +67,7 @@ def tonotopic_mapping(
     unfiltered_graph = graph.copy()
 
     if filter_factor is not None:
-        if 0 < filter_factor < 1:
+        if 0 <= filter_factor < 1:
             rng = np.random.default_rng(seed=1234)
             original_array = np.array(comp_label_ids)
             target_length = int(len(original_array) * filter_factor)

reproducibility/tonotopic_mapping/repro_tonotopic_mapping.py

@@ -19,7 +19,7 @@ def repro_tonotopic_mapping(
     default_cell_type = "ihc"
     default_max_edge_distance = 30
     default_min_length = 50
-    default_filter_factor = 0
+    default_filter_factor = None
     default_component_list = [1]
 
     with open(ddict, 'r') as myfile:

scripts/prediction/tonotopic_mapping.py

@@ -16,7 +16,7 @@ def main():
     parser.add_argument("-o", "--output", required=True, help="Output path for post-processed table.")
 
     parser.add_argument("-t", "--type", type=str, default="ihc", help="Cell type of segmentation.")
-    parser.add_argument("--filter", type=float, default=0, help="Fraction of nodes to remove before mapping.")
+    parser.add_argument("--filter", type=float, default=None, help="Fraction of nodes to remove before mapping.")
     parser.add_argument("--edge_distance", type=float, default=30, help="Maximal edge distance between nodes.")
     parser.add_argument("--component_length", type=int, default=50, help="Minimal number of nodes in component.")