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Dictionaries for block extraction, tonotopic mapping, and object measures
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lines changed

8 files changed

+315
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lines changed

‎reproducibility/block_extraction/ChReef_GEK49L.json‎

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[
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{
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"cochlea": "G_EK_000049_L",
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"image_channel": [
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"GFP",
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"PV",
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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"n_blocks": 8,
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"halo_size": [
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"component_list": [
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"crop_centers": [
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]
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}
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]

‎reproducibility/block_extraction/ChReef_GEK49R.json‎

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[
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{
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"cochlea": "G_EK_000049_R",
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"image_channel": [
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"GFP",
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"PV",
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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"n_blocks": 8,
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"halo_size": [
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],
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"component_list": [
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],
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"crop_centers": [
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}
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]

‎reproducibility/block_extraction/ChReef_MLR153L.json‎

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[
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{
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"cochlea": "M_LR_000153_L",
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"image_channel": [
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"PV",
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"GFP",
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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"n_blocks": 6,
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"halo_size": [
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],
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"component_list": [
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],
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"crop_centers": [
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]
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]
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}
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]

‎reproducibility/block_extraction/GEK11R_Myo7a.json‎

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[
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{
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"cochlea": "G_EK_000011_R",
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"image_channel": [
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"Myo7a_resized",
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"IHC_resized_v4b"
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],
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"segmentation_channel": "IHC_resized_v4b",
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"type": "ihc",
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"halo_size": [
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50
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],
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"component_list": [
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],
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"crop_centers": [
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[
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],
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[
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],
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[
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],
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[
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]
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]
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}
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]

‎reproducibility/block_extraction/MLR215R_CR.json‎

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[
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{
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"cochlea": "M_LR_000215_R",
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"image_channel": [
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"CR",
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"IHC_v4b"
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],
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"segmentation_channel": "IHC_v4b",
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"type": "ihc",
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"n_blocks": 6,
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"halo_size": [
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],
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"component_list": [
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],
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"crop_centers": [
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],
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[
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],
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[
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],
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[
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671
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],
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[
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293
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],
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[
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591
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]
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]
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}
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]

‎reproducibility/object_measures/ChReef_GEK49L.json‎

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[
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{
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"cochlea": "G_EK_000049_L",
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"image_channel": [
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"GFP"
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],
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"segmentation_channel": "SGN_v2",
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"background_mask": "yes",
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"component_list": [
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1
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]
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}
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]

‎reproducibility/object_measures/ChReef_GEK49R.json‎

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[
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{
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"cochlea": "G_EK_000049_R",
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"image_channel": [
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"GFP"
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],
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"segmentation_channel": "SGN_v2",
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"background_mask": "yes",
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"component_list": [
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1
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]
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}
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]

‎reproducibility/tonotopic_mapping/ChReef_MLR153L.json‎

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[
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{
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"cochlea": "M_LR_000153_L",
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"component_list": [
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1,
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2,
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3
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn"
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}
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]

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