Minimal documentation for installation process

Author: schilling40

scripts/baselines/README.md

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+# Baselines for the Segmentation of IHCs and SGNs
+
+Other networks/methods have been evaluated on SGN and IHC crops to compare the proposed method to the state of the art and justify the development of said method.
+Cellpose 3, Cellpose-SAM, micro-sam, and the distance U-Net were evaluated for both SGNs and IHCs.
+Additionally, Stardist was used for SGN segmentation.
+HCAT, a specialized tool for the segmentation of IHCs, was omitted because it is a purely 2D network and, therefore, does not fit the use case.
+
+## Micro-sam
+
+Follow [instructions](https://computational-cell-analytics.github.io/micro-sam/micro_sam.html).
+
+## Cellpose-SAM
+
+Instalation:
+```
+micromamba create --name cellpose-sam python=3.10
+micromamba activate cellpose-sam
+python -m pip install cellpose
+python -m pip install cellpose --upgrade
+```
+
+The script is adaapted from the [example Jupyter notebook online](https://github.com/MouseLand/cellpose/blob/main/notebooks/run_Cellpose-SAM.ipynb).
+
+## Cellpose 3
+
+Installation:
+```
+micromamba create --name cellpose3 python=3.10
+micromamba activate cellpose3
+python -m pip install cellpose==3.1.1.2
+```
+
+The script is adapted from the [example Jupyter notebook online](https://github.com/MouseLand/cellpose/blob/main/notebooks/run_cellpose3.ipynb).
+
+## Stardist
+
+Installation:
+```
+micromamba create -n stardist python=3.11 napari pyqt stardist-napari -y
+micromamba activate stardist
+python3.11 -m pip install 'tensorflow[and-cuda]'
+python3.11 -m pip install stardist
+python3.11 -m pip install 'numpy<2'
+```