Fix bug in default threshold value

constantinpape · constantinpape · commit e8f8c68efda9 · 2025-07-24T17:58:14.000+02:00
diff --git a/scripts/intensity_annotation/gfp_annotation.py b/scripts/intensity_annotation/gfp_annotation.py
@@ -243,7 +243,7 @@ def pick_widget(viewer: napari.Viewer, value: float = 0.0):
         },
         call_button="Apply",
     )
-    def threshold_widget(viewer: napari.Viewer, threshold: float = (max_val - min_val) / 2):
+    def threshold_widget(viewer: napari.Viewer, threshold: float = (max_val + min_val) / 2):
         label_ids = statistics.label_id.values
         stat_name = stat_widget.param_box.currentText()
         vals = statistics[stat_name].values

Original file line number	Diff line number	Diff line change
`@@ -243,7 +243,7 @@ def pick_widget(viewer: napari.Viewer, value: float = 0.0):`
`243`	`243`	`},`
`244`	`244`	`call_button="Apply",`
`245`	`245`	`)`
`246`		`- def threshold_widget(viewer: napari.Viewer, threshold: float = (max_val - min_val) / 2):`
	`246`	`+ def threshold_widget(viewer: napari.Viewer, threshold: float = (max_val + min_val) / 2):`
`247`	`247`	`label_ids = statistics.label_id.values`
`248`	`248`	`stat_name = stat_widget.param_box.currentText()`
`249`	`249`	`vals = statistics[stat_name].values`