Merge pull request #106 from computational-cell-analytics/dev

Install micro_sam.sam_annotator

Author: constantinpape

.github/doc_env.yaml

@@ -5,8 +5,10 @@ name:
     sam
 dependencies:
     - cpuonly
+    - napari
     - pdoc
     - pooch
+    - pyqt
     - python-elf
     - pytorch
     - torchvision

.github/workflows/build_docs.yaml

@@ -1,19 +1,32 @@
 name: build_documentation
 
-# build the documentation for a new commit
+# build the documentation for a new release
 on:
   release:
     types: created
 
+# # for debugging
+# on: [push, pull_request]
 
 # security: restrict permissions for CI jobs.
 permissions:
   contents: read
 
+# NOTE: importing of napari fails with CI and I am not quite sure why
+# I tried to adjust it based on the napari CI tests, but that didn't seem to help
+
+# https://github.com/napari/napari/blob/main/.github/workflows/test_comprehensive.yml
 jobs:
   # Build the documentation and upload the static HTML files as an artifact.
   build:
-    runs-on: ubuntu-latest
+	runs-on: ubuntu-latest
+  # runs-on: ${{ matrix.platform }}
+  # strategy:
+  #   matrix:
+  #     platform: [ubuntu-latest]
+  #     python: ["3.10"]
+  # 	backend: [pyqt5`]
+
     steps:
       - name: Checkout
         uses: actions/checkout@v2

micro_sam/__init__.py

@@ -1,15 +1,8 @@
+from .__version__ import __version__
+
 """
 .. include:: ../doc/start_page.md
 .. include:: ../doc/installation.md
 .. include:: ../doc/annotation_tools.md
 .. include:: ../doc/python_library.md
 """
-
-__all__ = [
-    "instance_segmentation",
-    "prompt_based_segmentation",
-    "prompt_generators",
-    "sample_data",
-    "util",
-    "visualization",
-]

micro_sam/__version__.py

@@ -1 +1 @@
-__version__ = "0.1.1"
+__version__ = "0.1.2"