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README.md

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- **3d segmentation**: via the command `micro_sam.annotator_3d` or with the function `micro_sam.sam_annotator.annotator_3d` from python. Run `micro_sam.annotator_3d -h` or check out [examples/sam_annotator_3d](https://github.com/computational-cell-analytics/micro-sam/blob/master/examples/sam_annotator_3d.py) for details.
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- **tracking**: via the command `micro_sam.annotator_tracking` or with the function `micro_sam.sam_annotator.annotator_tracking` from python. Run `micro_sam.annotator_tracking -h` or check out [examples/sam_annotator_tracking](https://github.com/computational-cell-analytics/micro-sam/blob/master/examples/sam_annotator_tracking.py) for details.
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TODO
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- show image with annotated user interface (for 3d?!)
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- link to videos that explain the functionality for the 3 plugins
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All three applications are built with napari. If you are not familiar with napari yet, start [here](https://napari.org/stable/tutorials/fundamentals/quick_start.html).
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### 2D Segmentation
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TODO annotated screenshot + link to tutorial video.
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### 3D Segmentation
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TODO annotated screenshot + link to tutorial video.
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### Tracking
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TODO annotated screenshot + link to tutorial video.
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### Tips & Tricks
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TODO
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- automatic instance segmentation limitations
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## Using the micro_sam library
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TODO

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