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constantinpapeconstantinpape
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Merge pull request #91 from computational-cell-analytics/68_installer_skripts
Add installer script
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‎.github/workflows/build_installers.yaml‎

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name: build_installers
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on:
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push:
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tags:
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- '**'
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jobs:
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build_intaller:
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name: ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [windows-latest, ubuntu-latest, macos-latest]
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env:
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PREPARE_SCRIPT: |
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cd deployment
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conda install -y -c conda-forge constructor
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conda install -y -c conda-forge ruamel.yaml
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conda install -y -c conda-forge mamba
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mamba env create --file=env.yaml
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RUN_SCRIPT: |
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python version_getter.py
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mkdir ./${{ matrix.os }}_x86_64
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constructor --output-dir ./${{ matrix.os }}_x86_64 .
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steps:
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- name: checkout
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uses: actions/checkout@v3
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- name: setup conda
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if: matrix.os == 'windows-latest' || matrix.os == 'ubuntu-latest'
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uses: conda-incubator/setup-miniconda@v2
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with:
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miniconda-version: "latest"
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auto-activate-base: true
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activate-environment: ""
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env:
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ACTIONS_ALLOW_UNSECURE_COMMANDS: true
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- name: build ${{ matrix.os }}_x86_64
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if: matrix.os == 'windows-latest'
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shell: pwsh
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run: |
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${{ env.PREPARE_SCRIPT }}
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conda activate __MICROSAM_BUILD_ENV__
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conda install -c anaconda menuinst
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python windows_menu_setup.py
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conda activate base
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${{ env.RUN_SCRIPT }}
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- name: build ${{ matrix.os }}_x86_64
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if: matrix.os == 'ubuntu-latest'
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shell: bash -el {0}
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run: |
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${{ env.PREPARE_SCRIPT }}
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${{ env.RUN_SCRIPT }}
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- name: build ${{ matrix.os }}_x86_64_step1
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if: matrix.os == 'macos-latest'
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shell: bash -el {0}
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run: |
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brew install micromamba
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/usr/local/opt/micromamba/bin/micromamba shell init -s bash -p ~/micromamba
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- name: build ${{ matrix.os }}_x86_64_step2
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if: matrix.os == 'macos-latest'
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shell: bash -el {0}
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run: |
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cd deployment
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micromamba activate base
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micromamba install -y -c conda-forge python=3.10
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micromamba install -y -c conda-forge constructor
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micromamba install -y -c conda-forge ruamel.yaml
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micromamba install -y -c conda-forge mamba
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mamba env create --file=env.yaml
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python version_getter.py
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mkdir ./${{ matrix.os }}_x86_64
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constructor --conda-exe=$(which mamba) --output-dir ./${{ matrix.os }}_x86_64 .
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- name: upload installer
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uses: actions/upload-artifact@v3
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with:
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name: ${{ matrix.os }}_x86_64
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path: ./deployment/${{ matrix.os }}_x86_64
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retention-days: 5

‎deployment/construct.yaml‎

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name: micro_sam
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version: 0.1.0
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license_file: ../LICENSE
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installer_type: pkg #[osx] # This will trigger pkg build on Mac Os. On windows and linux, native build will be done and this has no effect.
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environment: __MICROSAM_BUILD_ENV__
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welcome_image: ../doc/images/micro-sam-logo.png
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header_image: ../doc/images/micro-sam-logo.png
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icon_image: ../doc/images/micro-sam-logo.png
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channels:
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- conda-forge
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welcome_text: Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod
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tempor incididunt ut labore et dolore magna aliqua.
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conclusion_text: Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris
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nisi ut aliquip ex ea commodo consequat.
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initialize_by_default: true

‎deployment/env.yaml‎

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name: __MICROSAM_BUILD_ENV__
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channels:
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- conda-forge
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dependencies:
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- napari
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- pyqt
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- pytorch::pytorch
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- pytorch::torchvision
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- micro_sam

‎deployment/version_getter.py‎

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import runpy
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import ruamel.yaml
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import os
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yaml = ruamel.yaml.YAML()
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yaml.preserve_quotes = True
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ctor_fname = os.path.join("construct.yaml")
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with open(ctor_fname, 'r') as stream:
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ctor_conf = yaml.load(stream)
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ctor_conf["version"] = runpy.run_path(os.path.join("..", "micro_sam", "__version__.py"))["__version__"]
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with open(ctor_fname, 'w') as outfile:
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yaml.dump(ctor_conf, outfile)

‎deployment/windows_menu.json‎

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{
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"menu_name": "micro_sam",
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"menu_items":
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[
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{
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"script": "${PREFIX}/Scripts/micro_sam.annotator.exe",
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"name": "micro_sam",
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"icon": "${PREFIX}/Menu/micro-sam-logo.ico",
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"workdir": "${PREFIX}",
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"desktop": true,
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"quicklaunch": true
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}
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]
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}

‎deployment/windows_menu_setup.py‎

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import menuinst
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import shutil
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import os
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conda_dir = os.environ["CONDA_PREFIX"]
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menu_dir = os.path.join(conda_dir, "Menu")
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os.makedirs(menu_dir, exist_ok = True)
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shutil.copy("../doc/images/micro-sam-logo.ico", menu_dir)
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shutil.copy("./windows_menu.json", menu_dir)
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menuinst.install(os.path.join(menu_dir, 'windows_menu.json'), prefix=conda_dir)

‎doc/images/micro-sam-logo.ico‎

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