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@@ -36,7 +36,6 @@ cd synapse-net
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```bash
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conda env create -f environment.yaml
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```
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If you are using Windows then you have to use a different environment file for the installation: Use `environment_gpu_win.yaml` if you have a GPU and `environment_cpu_win.yaml` without a GPU.
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- You will need to confirm this step. It will take a while. Afterwards you can activate the environment:
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```bash
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conda activate synapse-net
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> Note: If you use `mamba` instead of conda just replace `conda` in the commands above with `mamba`.
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> Note: We also provide an environment for a CPU version of SynapseNet. You can install it by replacing `environment.yaml` with `environment_cpu.yaml` in the respective command above. This version can be used for 2D vesicle segmentation, but it does not work for 3D segmentation.
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> Note: If you have issues with the CUDA version then install a PyTorch that matches your nvidia drivers. See [pytorch.org](https://pytorch.org/) for details.
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### Updating SynapseNet
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If you have installed SynapseNet following the instructions above then you can update it like this:
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- Go to the foloder where you have downloaded SyanapseNet in a terminal, e.g. via `cd synapase-net`
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- Go to the folder where you have downloaded SynapseNet in a terminal, e.g. via `cd synapse-net`
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