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SarahMuthSarahMuth
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store segID, use existing seg
1 parent 17b9368 commit ac4b9d7

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+189
-122
lines changed

9 files changed

+189
-122
lines changed

‎.gitignore‎

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -14,3 +14,4 @@ scripts/rizzoli/upsample_data.py
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scripts/cooper/training/find_rec_testset.py
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synapse-net-models/
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scripts/portal/upscale_tomo.py
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analysis_results/

‎analysis_results/Munc13DKO/KO/AZ_distances.csv‎

Lines changed: 36 additions & 36 deletions
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@@ -1,59 +1,59 @@
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‎analysis_results/Munc13DKO/KO/AZ_distances_within_100.csv‎

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -1,14 +1,14 @@
11
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1414
12,79.42141142034684,,83.90160987728423,72.92218477253682,

‎analysis_results/Munc13DKO/KO/AZ_distances_within_200.csv‎

Lines changed: 16 additions & 16 deletions
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@@ -1,38 +1,38 @@
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2020
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‎analysis_results/Munc13DKO/KO/AZ_distances_within_40.csv‎

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,9 @@
11
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2-
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7,31.31223237011376,,,,

‎analysis_results/Munc13DKO/KO/AZ_distances_within_40_with_diameters.csv‎

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@@ -1,9 +1,9 @@
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,A_M13DKO_080212_DKO1.2_crop_distance,A_M13DKO_080212_DKO1.2_crop_diameter,G_M13DKO_060212_DKO1.1_crop_distance,G_M13DKO_060212_DKO1.1_crop_diameter,C_M13DKO_080212_DKO1.2_crop_distance,C_M13DKO_080212_DKO1.2_crop_diameter,E_M13DKO_080212_DKO1.2_crop_distance,E_M13DKO_080212_DKO1.2_crop_diameter,H_M13DKO_080212_DKO1.2_crop_distance,H_M13DKO_080212_DKO1.2_crop_diameter
2-
0,9.061299244589597,59.04457273790773,,,8.368546110287019,47.81289742868499,14.660406679215964,54.5150906509724,6.216,47.81289742868499
3-
1,9.57949936061379,55.036778046111,,,9.828358967803323,,14.660406679215964,43.95147120000001,7.121322629961376,52.5941871715535
4-
2,10.19025946676531,51.71755599228722,,,17.65004713874725,50.71323599999999,20.14214209065163,57.37547691442199,8.368546110287019,44.081313347574614
5-
3,13.277381820223445,53.45644442588228,,,22.57315387800296,48.75977939805501,24.57089741950831,50.26043018499918,11.419521180855176,47.81289742868499
6-
4,15.847752648246376,46.96871937691663,,,30.885139144902684,40.71121517937428,27.13944325147441,59.04457273790773,,
7-
5,16.519246592989646,52.81107133775702,,,,,31.46610176046597,46.96871937691663,,
8-
6,27.885533023415565,55.45059423403328,,,,,35.742000000000004,54.19966799968288,,
9-
7,31.42770503870749,,,,,,,,,
2+
0,8.511608543630283,59.04457273790773,,,8.368546110287019,47.81289742868499,14.660406679215964,54.5150906509724,6.216,47.81289742868499
3+
1,9.061299244589597,55.036778046111,,,9.828358967803323,,14.660406679215964,43.95147120000001,7.121322629961376,52.5941871715535
4+
2,10.19025946676531,52.81107133775702,,,17.65004713874725,50.71323599999999,20.14214209065163,57.37547691442199,8.368546110287019,44.081313347574614
5+
3,13.186127255566738,53.45644442588228,,,22.57315387800296,48.75977939805501,24.57089741950831,50.26043018499918,11.419521180855176,47.81289742868499
6+
4,15.38381513149453,46.96871937691663,,,30.885139144902684,40.71121517937428,27.13944325147441,59.04457273790773,,
7+
5,15.847752648246376,53.45644442588228,,,,,31.46610176046597,46.96871937691663,,
8+
6,27.842198835580497,55.45059423403328,,,,,35.742000000000004,54.19966799968288,,
9+
7,31.31223237011376,,,,,,,,,

‎run_sbatch_revision.sbatch‎

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@@ -10,5 +10,5 @@
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source ~/.bashrc
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conda activate synapse-net
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python /user/muth9/u12095/synapse-net/scripts/cooper/revision/updated_data_analysis/run_data_analysis.py \
13-
-i /mnt/lustre-emmy-hdd/projects/nim00007/data/synaptic-reconstruction/cooper/20241102_TOMO_DATA_Imig2014/exported/SNAP25/ \
13+
-i /mnt/lustre-emmy-hdd/projects/nim00007/data/synaptic-reconstruction/cooper/20241102_TOMO_DATA_Imig2014/exported/Munc13DKO/ \
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-o /mnt/lustre-emmy-hdd/projects/nim00007/data/synaptic-reconstruction/cooper/20241102_TOMO_DATA_Imig2014/afterRevision_analysis --store

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