exclude SV at boundary for automatic analysis

Author: SarahMuth

scripts/cooper/revision/updated_data_analysis/analysis_segmentations.py

@@ -56,7 +56,8 @@ def SV_pred(raw: np.ndarray, SV_model: str, output_path: str = None, store: bool
     Returns:
         np.ndarray: Segmentation result.
     """
-    seg, pred = segment_vesicles(input_volume=raw, model_path=SV_model, verbose=False, return_predictions=True)
+    #Excluding boundary SV, because they would also not be used in the manual annotation
+    seg, pred = segment_vesicles(input_volume=raw, model_path=SV_model, exclude_boundary=True, verbose=False, return_predictions=True)
 
     if store and output_path:
         pred_key = f"predictions/SV/pred"