error fixed

Author: [email protected]

examples/run.sh

@@ -1,18 +1,18 @@
 #!/usr/bin/env bash
 
 #Prcoess scans
-python amimspy process-scans --input ../tests/data/testData1.mzML ../tests/data/testData2.mzML \
+amimspy process-scans --input ../tests/data/testData1.mzML ../tests/data/testData2.mzML \
 --metascans ../tests/data/testData1.txt ../tests/data/testData2.txt --output ../tests/results/peaklists \
 --failed-wells ../tests/results/failed_wells.txt --processed_scans ../tests/results/processed_scans.txt \
 --snr-threshold 3 --min-scans 2 --min-fraction 0.5 --ppm 20 --metalist ../tests/data/SampleMetadata.txt 
 
 # hdf5 peaklist to txt
-python amimspy hdf5-pls-to-txt --input ../tests/results/peaklists.hdf5 --output ../tests/results
+amimspy hdf5-pls-to-txt --input ../tests/results/peaklists.hdf5 --output ../tests/results
 
 #Prcoess samples
-python amimspy process-samples --input ../tests/results/peaklists.hdf5 --output ../tests/results/peakmatrix.hdf5 \
+amimspy process-samples --input ../tests/results/peaklists.hdf5 --output ../tests/results/peakmatrix.hdf5 \
 --ppm 20 --min-fraction 0.5
 
 # hdf5 peak matrix to txt
-python amimspy hdf5-pm-to-txt --input ../tests/results/peakmatrix.hdf5 --output ../tests/results/peakmatrix.txt \
+amimspy hdf5-pm-to-txt --input ../tests/results/peakmatrix.hdf5 --output ../tests/results/peakmatrix.txt \
 --attribute_name intensity --representation-samples columns --comprehensive