Update examples and requirements

Author: RJMW

examples/run.bat

@@ -33,12 +33,12 @@ python -m dimspy sample-filter^
  --output tests/test_results/pm_a_bf_sf.hdf5^
  --min-fraction 0.8
 
-python -m dimspy hdf5-to-txt^
+python -m dimspy hdf5-pls-to-txt^
  --input tests/test_results/peaklists_rf.hdf5^
  --output tests/test_results^
  --delimiter tab
 
-python -m dimspy hdf5-to-txt^
+python -m dimspy hdf5-pm-to-txt^
  --input tests/test_results/pm_a_bf_sf.hdf5^
  --output tests/test_results/pm_a_bf_sf.txt^
  --delimiter tab

examples/run.sh

@@ -35,11 +35,11 @@ python -m dimspy sample-filter \
 --output tests/test_results/pm_a_bf_sf.hdf5 \
 --min-fraction 0.8
 
-python -m dimspy hdf5-to-txt \
+python -m dimspy hdf5-pls-to-txt \
 --input tests/test_results/peaklists_rf.hdf5 \
 --output tests/test_results/
 
-python -m dimspy hdf5-to-txt \
+python -m dimspy hdf5-pm-to-txt \
 --input tests/test_results/pm_a_bf_sf.hdf5 \
 --output tests/test_results/pm_a_bf_sf.txt
 

requirements.txt

@@ -1,6 +1,6 @@
 numpy==1.13.3
 scipy==1.0.0
-fastcluster==1.1.24
+fastcluster==1.1.23
 pymzml==0.7.8
 h5py==2.7.0
 pythonnet==2.3.0