add install script for bmcages/odes SUNDIALS bindings

Author: logicabrity

bin/install-scikit-odes.sh

@@ -0,0 +1,32 @@
+#!/bin/bash
+set -e
+
+# This script installs the python bindings to SUNDIALS called scikit ODES.
+# It requires SUNDIALS 2.6.2 to be installed.
+
+echo "Installing dependencies."
+sudo apt-get install python-dev
+sudo pip install scipy numpy cython enum34
+
+HERE_DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+FIDIMAG_DIR="$(dirname "$HERE_DIR")"
+LIBS_DIR=${FIDIMAG_DIR}/local
+
+echo "Downloading ODES to "${LIBS_DIR}"."
+mkdir -p ${LIBS_DIR}
+cd ${LIBS_DIR}
+
+git clone git://github.com/bmcage/odes.git odes
+cd odes
+
+# Paths to SUNDIALS are hardcoded in odes/scikits/odes/sundials/setup.py.
+# The README recommends to edit that file if you want to change the paths...
+
+sed -i \
+    "s|LIB_DIRS_SUNDIALS  = \[base_path\,|LIB_DIRS_SUNDIALS = [base_path, '${LIBS_DIR}\/lib',|g" \
+    scikits/odes/sundials/setup.py
+
+python setup.py build
+sudo python setup.py install
+
+cd ${HERE_DIR}

bin/install-sundials.sh

@@ -22,7 +22,7 @@ FIDIMAG_DIR="$(dirname "$HERE_DIR")"
 LIBS_DIR=${FIDIMAG_DIR}/local
 
 echo "Will install SUNDIALS to "${LIBS_DIR}" using CC="${CC}"."
-mkdir ${LIBS_DIR}
+mkdir -p ${LIBS_DIR}
 cd ${LIBS_DIR}
 
 download_and_cmake_install() {