Merge pull request #94 from computationalmodelling/cov-config-abs

Pass coverage config file by absolute path

Author: vidartf

.gitignore

@@ -5,4 +5,6 @@ __pycache__
 **/build/
 *.egg-info
 .cache
+.pytest_cache
 .doit.db*
+.coverage*

appveyor.yml

@@ -14,7 +14,7 @@ install:
   # Ensure python scripts are from right version:
   - 'SET "PATH=%PYTHON%\Scripts;%PYTHON%;%PATH%"'
   # Update pip/setuptools:
-  - pip install --upgrade setuptools pip
+  - python -m pip install --upgrade setuptools pip
   # Install our package:
   - pip install .
   - pip install doit

nbval/cover.py

@@ -51,6 +51,8 @@ def setup_coverage(config, kernel, floc, output_loc=None):
         # Get options from pytest-cov's command line arguments:
         source = config.option.cov_source
         config_file = config.option.cov_config
+        if isinstance(config_file, str) and os.path.isfile(config_file):
+            config_file = os.path.abspath(config_file)
 
         # Copy the suffix of plugin if available
         suffix = _make_suffix(cov)

tests/sample_notebook.ipynb

@@ -37,7 +37,7 @@ def test_sum():
         "lib.myprod(1, 3)",
         "lib.myprod(2.5, 2.5)",
         "lib.myprod(2, 'cat')"
-    ])
+    ], mark_run=True)
     add_expected_plaintext_outputs(nb, [
         None, "3", "6.25", "'catcat'"
     ])