chore: serena

Author: arnog

.serena/memories/code_style_conventions.md

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+# Code Style and Conventions
+
+## General Conventions
+- **Language**: TypeScript for configuration and components
+- **Framework**: React components using Docusaurus patterns
+- **Styling**: CSS Modules pattern (index.module.css files)
+
+## Documentation Patterns
+- Tutorial pages follow: introduction → explanation → code examples
+- Reference pages start with hidden TOC: `<nav className="hidden">### FunctionName</nav>`
+- Use custom components: `<FunctionDefinition>`, `<Signature>`, `<Latex>`
+- Mini-recipes format: `**To <do something>**, <description>`
+
+## File Organization
+- Components in `src/components/`
+- Pages in `src/pages/`
+- Documentation in `docs/` with subdirectories for each product
+- CSS modules alongside components
+
+## Build Conventions
+- Changelogs copied from sibling repositories during build
+- API docs auto-generated from TypeScript definitions
+- Production builds go to submodules/cortex-js.github.io/
+
+## Important Notes
+- NEVER add comments unless explicitly requested
+- Follow existing patterns in the codebase
+- Prefer editing existing files over creating new ones
+- Don't create documentation files unless explicitly requested

.serena/memories/project_overview.md

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+# CortexJS.io Project Overview
+
+## Purpose
+Documentation website for the CortexJS ecosystem, specifically for MathLive (math editor) and Compute Engine (mathematical computation library).
+
+## Tech Stack
+- **Framework**: Docusaurus v3 (React-based static site generator)
+- **Language**: TypeScript/JavaScript
+- **Styling**: CSS Modules
+- **Deployment**: GitHub Pages (via submodule to cortex-js.github.io)
+- **Build Tools**: npm, bash scripts
+
+## Architecture
+- Static documentation site generated from Markdown files
+- API documentation auto-generated from TypeScript .d.ts files
+- Custom React components for documentation (FunctionDefinition, Signature, Latex, CodePlayground)
+- Deployment via Git submodule to separate GitHub Pages repository
+
+## Key Directories
+- `docs/` - Markdown documentation source
+- `src/` - React components and pages
+- `build/` - Generated output
+- `scripts/` - Build automation
+- `submodules/cortex-js.github.io/` - Deployment target
+
+## External Dependencies
+- References sibling directories `../mathlive/` and `../compute-engine/` for source files
+- Changelogs and API docs are copied from these during build

.serena/memories/suggested_commands.md

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+# Suggested Commands for CortexJS.io Development
+
+## Development Commands
+- `npm start` - Start local development server (Docusaurus dev mode)
+- `npm run build` - Build the site (runs bash scripts/build.sh)
+- `npm run serve` - Serve the built site locally
+
+## Content Updates
+- `npm run update` - Update dependent modules and regenerate API docs
+- `npm run stage` - Create production build in submodules/cortex-js.github.io/
+- `npm run deploy` - Deploy staged changes to GitHub Pages
+
+## Utility Commands
+- `npm run clear` - Clear Docusaurus cache
+- `npm run swizzle` - Eject Docusaurus components for customization
+
+## Git Commands (Darwin/macOS)
+- `git status` - Check current changes
+- `git diff` - View unstaged changes
+- `git add .` - Stage all changes
+- `git commit -m "message"` - Commit changes
+- `git push` - Push to remote
+
+## File Operations
+- `ls -la` - List files with details
+- `find . -name "*.ts"` - Find TypeScript files
+- `grep -r "pattern" .` - Search for pattern in files
+
+## Testing & Validation
+- Manual browser testing after build
+- No automated test suite currently exists

.serena/memories/task_completion_checklist.md

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+# Task Completion Checklist
+
+When completing a task in the CortexJS.io project:
+
+## Before Marking Complete
+1. **Build Verification**
+   - Run `npm run build` to ensure no build errors
+   - Check that all files compile correctly
+
+2. **Manual Testing**
+   - Start dev server with `npm start`
+   - Verify changes work in browser
+   - Test on different viewports if UI changes
+
+3. **Code Quality**
+   - Ensure code follows existing patterns
+   - No unnecessary comments added
+   - CSS follows CSS Modules pattern
+   - React components follow Docusaurus conventions
+
+4. **Documentation Updates**
+   - Update relevant .md files if needed
+   - Ensure API docs regenerate properly if changed
+
+## Validation Steps
+- No automated tests exist - rely on manual verification
+- Visual validation in browser is critical
+- Check console for JavaScript errors
+- Verify links work correctly
+
+## Important Reminders
+- NEVER commit unless explicitly asked
+- Prefer editing existing files over creating new ones
+- Follow existing code patterns exactly

.serena/project.yml

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+# language of the project (csharp, python, rust, java, typescript, go, cpp, or ruby)
+#  * For C, use cpp
+#  * For JavaScript, use typescript
+# Special requirements:
+#  * csharp: Requires the presence of a .sln file in the project folder.
+language: typescript
+
+# whether to use the project's gitignore file to ignore files
+# Added on 2025-04-07
+ignore_all_files_in_gitignore: true
+# list of additional paths to ignore
+# same syntax as gitignore, so you can use * and **
+# Was previously called `ignored_dirs`, please update your config if you are using that.
+# Added (renamed)on 2025-04-07
+ignored_paths: []
+
+# whether the project is in read-only mode
+# If set to true, all editing tools will be disabled and attempts to use them will result in an error
+# Added on 2025-04-18
+read_only: false
+
+
+# list of tool names to exclude. We recommend not excluding any tools, see the readme for more details.
+# Below is the complete list of tools for convenience.
+# To make sure you have the latest list of tools, and to view their descriptions, 
+# execute `uv run scripts/print_tool_overview.py`.
+#
+#  * `activate_project`: Activates a project by name.
+#  * `check_onboarding_performed`: Checks whether project onboarding was already performed.
+#  * `create_text_file`: Creates/overwrites a file in the project directory.
+#  * `delete_lines`: Deletes a range of lines within a file.
+#  * `delete_memory`: Deletes a memory from Serena's project-specific memory store.
+#  * `execute_shell_command`: Executes a shell command.
+#  * `find_referencing_code_snippets`: Finds code snippets in which the symbol at the given location is referenced.
+#  * `find_referencing_symbols`: Finds symbols that reference the symbol at the given location (optionally filtered by type).
+#  * `find_symbol`: Performs a global (or local) search for symbols with/containing a given name/substring (optionally filtered by type).
+#  * `get_current_config`: Prints the current configuration of the agent, including the active and available projects, tools, contexts, and modes.
+#  * `get_symbols_overview`: Gets an overview of the top-level symbols defined in a given file or directory.
+#  * `initial_instructions`: Gets the initial instructions for the current project.
+#     Should only be used in settings where the system prompt cannot be set,
+#     e.g. in clients you have no control over, like Claude Desktop.
+#  * `insert_after_symbol`: Inserts content after the end of the definition of a given symbol.
+#  * `insert_at_line`: Inserts content at a given line in a file.
+#  * `insert_before_symbol`: Inserts content before the beginning of the definition of a given symbol.
+#  * `list_dir`: Lists files and directories in the given directory (optionally with recursion).
+#  * `list_memories`: Lists memories in Serena's project-specific memory store.
+#  * `onboarding`: Performs onboarding (identifying the project structure and essential tasks, e.g. for testing or building).
+#  * `prepare_for_new_conversation`: Provides instructions for preparing for a new conversation (in order to continue with the necessary context).
+#  * `read_file`: Reads a file within the project directory.
+#  * `read_memory`: Reads the memory with the given name from Serena's project-specific memory store.
+#  * `remove_project`: Removes a project from the Serena configuration.
+#  * `replace_lines`: Replaces a range of lines within a file with new content.
+#  * `replace_symbol_body`: Replaces the full definition of a symbol.
+#  * `restart_language_server`: Restarts the language server, may be necessary when edits not through Serena happen.
+#  * `search_for_pattern`: Performs a search for a pattern in the project.
+#  * `summarize_changes`: Provides instructions for summarizing the changes made to the codebase.
+#  * `switch_modes`: Activates modes by providing a list of their names
+#  * `think_about_collected_information`: Thinking tool for pondering the completeness of collected information.
+#  * `think_about_task_adherence`: Thinking tool for determining whether the agent is still on track with the current task.
+#  * `think_about_whether_you_are_done`: Thinking tool for determining whether the task is truly completed.
+#  * `write_memory`: Writes a named memory (for future reference) to Serena's project-specific memory store.
+excluded_tools: []
+
+# initial prompt for the project. It will always be given to the LLM upon activating the project
+# (contrary to the memories, which are loaded on demand).
+initial_prompt: ""
+
+project_name: "cortexjs.io"