diff --git a/lib/models.ts b/lib/models.ts index 97dbbb8..3bc81eb 100644 --- a/lib/models.ts +++ b/lib/models.ts @@ -1,6 +1,8 @@ const isProduction = process.env.APP_ENVIRONMENT === 'production' -const models: ModelMap = require('../models.yml') +const models: ModelMap = isProduction + ? require('../models.yml') + : require('../models-staging.yml') Object.keys(models).forEach(modelId => { if (isProduction && !models[modelId].isProductionReady) { diff --git a/models-staging.yml b/models-staging.yml new file mode 100644 index 0000000..d487f36 --- /dev/null +++ b/models-staging.yml @@ -0,0 +1,602 @@ +basel: + name: Covid19-Scenarios (Neher) + origin: Neher Lab, Biozentrum Basel + isProductionReady: true + imageURL: docker.pkg.github.com/covid-modeling/model-runner/neherlab-covid-19-scenarios-connector:master + metaURLs: + code: https://github.com/neherlab/covid19_scenarios + website: https://covid19-scenarios.org/about + description: | + We implement an age-stratified SEIR model with additional categories + for individuals exposed to the virus that are not yet infectious, severely sick + people in need of hospitalization, people in critical condition, and a fatal category. + The model is currently under active development and the US state level parameters are under review. + supportedParameters: + - contactReduction + - r0 + supportedRegions: + AD: [] + AE: [] + AF: [] + AG: [] + AL: [] + AM: [] + AR: [] + AT: [] + AU: [] + AZ: [] + BA: [] + BB: [] + BD: [] + BE: [] + BF: [] + BG: [] + BH: [] + BI: [] + BJ: [] + BN: [] + BO: [] + BR: [] + BS: [] + BT: [] + BW: [] + BY: [] + BZ: [] + CA: + - CA-AB + - CA-BC + - CA-MB + - CA-NB + - CA-NL + - CA-NS + - CA-NT + - CA-NU + - CA-ON + - CA-PE + - CA-QC + - CA-SK + - CA-YT + CF: [] + CH: + - CH-AG + - CH-AI + - CH-AR + - CH-BE + - CH-BL + - CH-BS + - CH-FR + - CH-GE + - CH-GL + - CH-GR + - CH-JU + - CH-LU + - CH-NE + - CH-NW + - CH-OW + - CH-SG + - CH-SH + - CH-SO + - CH-SZ + - CH-TG + - CH-TI + - CH-UR + - CH-VD + - CH-VS + - CH-ZG + - CH-ZH + CL: [] + CM: [] + CN: [] + CO: [] + CR: [] + CU: [] + CV: [] + CY: [] + CZ: [] + DE: + - DE-BB + - DE-BE + - DE-BW + - DE-BY + - DE-HB + - DE-HE + - DE-HH + - DE-MV + - DE-NI + - DE-NW + - DE-RP + - DE-SH + - DE-SL + - DE-SN + - DE-ST + - DE-TH + DJ: [] + DK: [] + DM: [] + DO: [] + DZ: [] + EC: [] + EE: [] + EG: [] + ES: + - ES-AN + - ES-AR + - ES-AS + - ES-CB + - ES-CE + - ES-CL + - ES-CM + - ES-CN + - ES-CT + - ES-EX + - ES-GA + - ES-IB + - ES-MC + - ES-MD + - ES-ML + - ES-NC + - ES-PV + - ES-RI + - ES-VC + ET: [] + FI: [] + FJ: [] + FM: [] + FO: [] + FR: + - FR-ARA + - FR-BFC + - FR-BRE + - FR-COR + - FR-CVL + - FR-GES + - FR-GF + - FR-GUA + - FR-HDF + - FR-IDF + - FR-LRE + - FR-MAY + - FR-MQ + - FR-NAQ + - FR-NOR + - FR-OCC + - FR-PAC + - FR-PDL + GA: [] + GB: [] + GD: [] + GE: [] + GH: [] + GI: [] + GL: [] + GM: [] + GN: [] + GQ: [] + GR: [] + GT: [] + GW: [] + GY: [] + HK: [] + HN: [] + HR: [] + HT: [] + HU: [] + ID: [] + IE: [] + IL: [] + IN: + - IN-AN + - IN-AP + - IN-AR + - IN-AS + - IN-BR + - IN-CH + - IN-CT + - IN-DD + - IN-DL + - IN-DN + - IN-GA + - IN-GJ + - IN-HP + - IN-HR + - IN-JH + - IN-JK + - IN-KA + - IN-KL + - IN-LD + - IN-MH + - IN-ML + - IN-MN + - IN-MP + - IN-MZ + - IN-NL + - IN-OR + - IN-PB + - IN-PY + - IN-RJ + - IN-SK + - IN-TH + - IN-TN + - IN-TR + - IN-UP + - IN-UT + - IN-WB + IQ: [] + IR: [] + IS: [] + IT: + - IT-21 + - IT-23 + - IT-25 + - IT-32 + - IT-34 + - IT-36 + - IT-42 + - IT-45 + - IT-52 + - IT-55 + - IT-57 + - IT-62 + - IT-65 + - IT-67 + - IT-72 + - IT-75 + - IT-77 + - IT-78 + - IT-82 + - IT-88 + - IT-BZ + - IT-TN + JM: [] + JO: [] + JP: + - JP-47 + KE: [] + KG: [] + KH: [] + KI: [] + KM: [] + KN: [] + KP: [] + KR: [] + KW: [] + KZ: [] + LA: [] + LB: [] + LC: [] + LI: [] + LK: [] + LR: [] + LT: [] + LU: [] + LV: [] + LY: [] + MA: [] + MC: [] + MD: [] + ME: [] + MG: [] + MH: [] + MK: [] + ML: [] + MM: [] + MN: [] + MT: [] + MU: [] + MV: [] + MW: [] + MX: [] + MY: [] + MZ: [] + NA: [] + NI: [] + NL: [] + NO: [] + NP: [] + NR: [] + NZ: [] + OM: [] + PA: [] + PE: [] + PH: + - PH-00 + - PH-01 + - PH-02 + - PH-03 + - PH-05 + - PH-06 + - PH-07 + - PH-08 + - PH-09 + - PH-10 + - PH-11 + - PH-12 + - PH-13 + - PH-14 + - PH-15 + - PH-40 + - PH-41 + PK: [] + PL: [] + PT: [] + PW: [] + PY: [] + QA: [] + RO: [] + RS: [] + RU: [] + SA: [] + SB: [] + SC: [] + SD: [] + SE: + - SE-AB + SG: [] + SI: [] + SK: [] + SM: [] + SN: [] + SO: [] + SR: [] + ST: [] + SV: [] + SY: [] + SZ: [] + TG: [] + TH: [] + TJ: [] + TL: [] + TM: [] + TN: [] + TO: [] + TR: [] + TT: [] + TW: [] + TZ: [] + UA: [] + UG: [] + US: + - US-AK + - US-AL + - US-AR + - US-AZ + - US-CA + - US-CO + - US-CT + - US-DC + - US-DE + - US-FL + - US-GA + - US-HI + - US-IA + - US-ID + - US-IL + - US-IN + - US-KS + - US-KY + - US-LA + - US-MA + - US-MD + - US-ME + - US-MI + - US-MN + - US-MO + - US-MS + - US-MT + - US-NC + - US-ND + - US-NE + - US-NH + - US-NJ + - US-NM + - US-NV + - US-NY + - US-OH + - US-OK + - US-OR + - US-PA + - US-RI + - US-SC + - US-SD + - US-TN + - US-TX + - US-UT + - US-VA + - US-VT + - US-WA + - US-WI + - US-WV + - US-WY + UY: [] + UZ: [] + VC: [] + VE: [] + VN: [] + YE: [] + ZA: [] + ZM: [] + ZW: [] + +mrc-ide-covid-sim: + name: CovidSim (Imperial) + origin: Imperial College + isProductionReady: true + imageURL: docker.pkg.github.com/covid-modeling/model-runner/mrc-ide-covidsim-connector:master + metaURLs: + code: https://github.com/mrc-ide/covid-sim + paper: https://www.imperial.ac.uk/media/imperial-college/medicine/sph/ide/gida-fellowships/Imperial-College-COVID19-NPI-modelling-16-03-2020.pdf + description: | + We consider the feasibility and implications of strategies for COVID-19, + looking at a range of NPI measures. It is important to note at the outset + that given SARS-CoV-2 is a newly emergent virus, much remains to be + understood about its transmission. In addition, the impact of many of the + NPIs detailed here depends critically on how people respond to their + introduction, which is highly likely to vary between countries and even + communities. + supportedParameters: + - interventionStrategies + - r0 + supportedRegions: + AL: [] + AT: [] + BA: [] + BE: [] + BG: [] + BY: [] + CA: [] + CH: [] + CR: [] + DE: [] + DK: [] + EE: [] + ES: [] + FI: [] + FR: [] + GB: + - GB-LND + GI: [] + GR: [] + HR: [] + HU: [] + IR: [] + IS: [] + IT: [] + LT: [] + LU: [] + LV: [] + MD: [] + ME: [] + MK: [] + MT: [] + NG: [] + NL: [] + NO: [] + PL: [] + PT: [] + RO: [] + RS: [] + RU: [] + SE: [] + SI: [] + SK: [] + UA: [] + US: + - US-AK + - US-AL + - US-AR + - US-AS + - US-AZ + - US-CA + - US-CO + - US-CT + - US-DC + - US-DE + - US-FL + - US-GA + - US-GU + - US-HI + - US-IA + - US-ID + - US-IL + - US-IN + - US-KS + - US-KY + - US-LA + - US-MA + - US-MD + - US-ME + - US-MI + - US-MN + - US-MO + - US-MS + - US-MT + - US-NC + - US-ND + - US-NE + - US-NH + - US-NJ + - US-NM + - US-NV + - US-NY + - US-OH + - US-OK + - US-OR + - US-PA + - US-PR + - US-RI + - US-SC + - US-SD + - US-TN + - US-TX + - US-UT + - US-VA + - US-VI + - US-VT + - US-WA + - US-WI + - US-WV + - US-WY + +mc19: + name: Modeling Covid-19 + origin: Modeling Covid-19 + imageURL: docker.pkg.github.com/covid-modeling/model-runner/modelingcovid-covidmodel-connector:master + isProductionReady: false + metaURLs: + code: https://github.com/modelingcovid/covidmodel + paper: https://dash.harvard.edu/bitstream/handle/1/42638988/Social%20distancing%20strategies%20for%20curbing%20the%20Covid-19%20epidemic.pdf?sequence=1&isAllowed=y + website: https://modelingcovid.com/about + description: | + We’ve implemented a model for the spread of the virus which is an enrichment + of the basic SEIR model with adjustments for distancing and adding PCR confirmation + and Fatality states. This allows us to fit the solutions of the system of SEIR equations + to actual data as reported by various states. We then use a combination of parameters + from the fits and literature values to generate Monte Carlo simulations around the + fit expectations to get a sense of our uncertainty in the projections. + supportedParameters: + - contactReduction + supportedRegions: + US: + - US-AZ + - US-CA + - US-CO + - US-CT + - US-FL + - US-GA + - US-IL + - US-IN + - US-LA + - US-MA + - US-MD + - US-MI + - US-MS + - US-NJ + - US-NV + - US-NY + - US-OH + - US-OK + - US-OR + - US-PA + - US-SC + - US-TX + - US-VA + - US-VT + - US-WA + - US-WI + +idm-covasim: + name: Covasim + origin: Institute for Disease Modeling + imageURL: docker.pkg.github.com/covid-modeling/covasim-connector/covasim-connector:master + isProductionReady: false + metaURLs: + code: https://github.com/InstituteforDiseaseModeling/covasim + paper: http://paper.covasim.org/ + website: http://covasim.org/ + description: | + Covasim is a stochastic agent-based simulator designed to be used for COVID-19 (novel coronavirus, SARS-CoV-2) epidemic analyses. + These include projections of indicators such as numbers of infections and peak hospital demand. + Covasim can also be used to explore the potential impact of different interventions, including social distancing, school closures, testing, contact tracing, and quarantine. + supportedParameters: + - interventionStrategies + - contactReduction