update doc and fix linting

Author: Remi-Gau

src/convertSourceToRaw.m

@@ -24,13 +24,13 @@ function convertSourceToRaw(cfg)
 
     % add dummy README and CHANGE file
     templateFolder = fullfile(fileparts(mfilename('fullpath')), '..', 'templates');
-    
+
     copyfile(fullfile(templateFolder, 'README'), ...
-                      sourceDir);
+             sourceDir);
     copyfile(fullfile(templateFolder, 'CHANGES'), ...
-                      sourceDir);
+             sourceDir);
     copyfile(fullfile(templateFolder, '.bidsignore'), ...
-                      sourceDir);
+             sourceDir);
 
     copyfile(sourceDir, rawDir);
 

src/templates/test_templateTest.m

@@ -25,7 +25,7 @@ function test_templateTestBasic()
     % assertEqual(actualOupout, expectedOuput)
     % assertTrue( );
     % assertFalse( );
-    
+
     %% clean up (delete temporary files that were created)
 
 end

tests/README.md

@@ -24,6 +24,11 @@ You can use the function template to write more tests.
 
 It is in the [`src/templates` folder](../src/templates)
 
+## Manual tests
+
+This is the folder where we keep tests that can not be run in continuous
+integration even as simple "smoke tests".
+
 <!-- ## code coverage
 
 A lot of what follows does not really work locally because of needing to add the right

tests/manualTests/test_makeRawDataset.m

@@ -214,7 +214,7 @@ function test_makeRawDataset()
 
     %% add dummy data
     templateFolder = fullfile(fileparts(mfilename('fullpath')), '..', '..', 'templates');
-    
+
     subjectDir = fullfile(cfg.dir.output, 'source', 'sub-001', 'ses-001');
     funcDir = fullfile(subjectDir, 'func');