adapt test for bids validation

Author: Remi-Gau

manualTests/test_makeRawDataset.m

@@ -71,7 +71,14 @@ function test_makeRawDataset()
     saveEventsFile('close', cfg, logFile);
 
     % add dummy stim data
-    stimLogFile = saveEventsFile('open_stim', cfg, logFile);
+    stimLogFile.extraColumns.Speed.length = 1;
+    stimLogFile.extraColumns.LHL24.length = 3;
+    stimLogFile.extraColumns.is_Fixation.length = 1;
+    
+    stimLogFile.SamplingFrequency = 100;
+    stimLogFile.StartTime = 0;
+    
+    stimLogFile = saveEventsFile('open_stim', cfg, stimLogFile);
     for i = 1:100
         stimLogFile(i, 1).onset = cfg.mri.repetitionTime * i;
         stimLogFile(i, 1).trial_type = 'test';

src/createDataDictionary.m

@@ -32,15 +32,25 @@ function createDataDictionary(cfg, logFile)
                                               'Description', 'types of trial', ...
                                               'Levels', ''), ...
                          'duration', struct( ...
-                                            'Description', 'duration of the event or the block', ...
+                                            'Description', 'duration of the event', ...
                                             'Units', 's') ...
                         );
 
     if contains(fullFilename, '_stim')
+        
+        samplingFrequency = nan;
+        startTime = nan;
+        
+        if isfield(logFile, 'SamplingFrequency')
+        samplingFrequency = logFile(1).SamplingFrequency;
+        end
+        if isfield(logFile, 'StartTime')
+        startTime = logFile(1).StartTime;
+        end
 
         jsonContent = struct( ...
-                             'SamplingFrequency', nan, ...
-                             'StartTime',  nan, ...
+                             'SamplingFrequency', samplingFrequency, ...
+                             'StartTime',  startTime, ...
                              'Columns', []);
 
     end