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add tests matlab
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‎.github/dependabot.yml‎

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---
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# Documentation
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# https://docs.github.com/en/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
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version: 2
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updates:
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- package-ecosystem: 'github-actions'
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directory: '/'
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schedule:
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interval: 'monthly'
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- package-ecosystem: github-actions
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directory: /
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schedule:
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interval: monthly
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- package-ecosystem: 'gitsubmodule'
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directory: '/'
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schedule:
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interval: 'monthly'
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- package-ecosystem: gitsubmodule
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directory: /
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schedule:
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interval: monthly

‎.github/release-drafter.yml‎

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---
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template: |
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## Release Notes
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‎.github/workflows/bids_validator.yml‎

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---
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name: BIDS validator
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on:
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push:
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branches: ['master', 'main', 'dev']
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branches: [master, main, dev]
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pull_request:
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branches: ['*']
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‎.github/workflows/check_md_links.yml‎

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---
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name: Check Markdown links
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# checking for any dead links in markdown files
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on:
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push:
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branches:
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- master
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- dev
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- master
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- dev
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pull_request:
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branches: ['*']
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‎.github/workflows/codespell.yml‎

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---
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name: codespell
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on:
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codespell:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: codespell-project/actions-codespell@master
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- uses: actions/checkout@v3
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- uses: codespell-project/actions-codespell@master

‎.github/workflows/run_tests.yml‎

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---
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name: tests and coverage
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on:
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push:
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branches:
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- master
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- dev
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- master
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- dev
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pull_request:
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branches: ['*']
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- name: Code coverage
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uses: codecov/codecov-action@v3
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with:
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token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos
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file: coverage.xml # optional
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flags: octave # optional
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fail_ci_if_error: true # optional (default = false)
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file: coverage.xml
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flags: octave

‎.github/workflows/run_tests_matlab.yml‎

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---
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name: tests and coverage with matlab
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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on:
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push:
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branches:
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- dev
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- main
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pull_request:
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branches: ['*']
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schedule:
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- cron: 1 1 1 * *
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# Allows you to run this workflow manually from the Actions tab
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workflow_dispatch:
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jobs:
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tests_matlab:
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strategy:
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fail-fast: false
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matrix:
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version: [R2021a, R2021b, R2022a, R2022b]
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os: [ubuntu-latest, macos-latest, windows-latest]
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runs-on: ${{matrix.os}}
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steps:
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- name: Install MATLAB
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uses: matlab-actions/[email protected]
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with:
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release: ${{matrix.version}}
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- name: Install
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uses: actions/checkout@v3
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with:
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submodules: true
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fetch-depth: 0
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- name: Install Moxunit and MOcov
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run: |
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git clone https://github.com/MOxUnit/MOxUnit.git --depth 1
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git clone https://github.com/MOcov/MOcov.git --depth 1
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- name: Run tests
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uses: matlab-actions/[email protected]
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with:
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command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run tests_matlab;
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- name: Code coverage
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uses: codecov/codecov-action@v3
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with:
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file: coverage.xml
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flags: ${{ matrix.os }}_matlab-${{ matrix.version }}
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name: codecov-umbrella
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fail_ci_if_error: false

‎.github/workflows/tests_matlab.m‎

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%
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% (C) Copyright 2023 CPP_BIDS developers
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root_dir = getenv('GITHUB_WORKSPACE');
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addpath(fullfile(root_dir, 'MOcov', 'MOcov'));
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cd(fullfile(root_dir, 'MOxUnit', 'MOxUnit'));
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run moxunit_set_path();
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cd(fullfile(root_dir));
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run run_tests();

‎.github/workflows/validate_cff.yml‎

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---
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name: validate CITATION.cff
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on:
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push:
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branches: ['*']
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paths:
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- CITATION.cff
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- .github/workflows/validate_cff.yml
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pull_request:
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branches: ['*']
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paths:
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- CITATION.cff
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- .github/workflows/validate_cff.yml
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jobs:
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validate_cff:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- name: Check whether the citation metadata from CITATION.cff is valid
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uses: citation-file-format/[email protected]
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with:
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args: --validate

‎.pre-commit-config.yaml‎

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---
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repos:
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- repo: local
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hooks:
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- id: mh_version
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name: mh_version
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entry: mh_style
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args: [-v]
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verbose: true
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language: python
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additional_dependencies: [miss_hit_core]
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- id: mh_style
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name: mh_style
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entry: mh_style
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args: [--process-slx, --fix]
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files: ^(.*\.(m|slx))$
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language: python
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additional_dependencies: [miss_hit_core]
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- id: mh_metric
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name: mh_metric
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entry: mh_metric
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args: [--ci]
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files: ^(.*\.(m|slx))$
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language: python
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additional_dependencies: [miss_hit_core]
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- id: mh_lint
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name: mh_lint
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entry: mh_lint
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files: ^(.*\.(m|slx))$
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language: python
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additional_dependencies: [miss_hit]
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- repo: local
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hooks:
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- id: mh_style
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name: mh_style
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entry: mh_style
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args: [--process-slx, --fix]
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files: ^(.*\.(m|slx))$
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language: python
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additional_dependencies: [miss_hit_core]
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- id: mh_metric
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name: mh_metric
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entry: mh_metric
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args: [--ci]
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files: ^(.*\.(m|slx))$
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language: python
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additional_dependencies: [miss_hit_core]
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- id: mh_lint
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name: mh_lint
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entry: mh_lint
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files: ^(.*\.(m|slx))$
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language: python
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additional_dependencies: [miss_hit]
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: v4.4.0
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hooks:
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- id: trailing-whitespace
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- id: end-of-file-fixer
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- id: check-yaml
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- id: check-added-large-files
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- id: trailing-whitespace
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- id: end-of-file-fixer
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- id: check-yaml
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- id: check-added-large-files
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- repo: https://github.com/jumanjihouse/pre-commit-hook-yamlfmt
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rev: 0.2.3
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hooks:
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- id: yamlfmt
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args: [--mapping, '2', --sequence, '2', --offset, '0']
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- repo: https://github.com/codespell-project/codespell
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rev: v2.2.5
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hooks:
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- id: codespell

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