mh autofix

Author: Remi-Gau

src/saveEventsFile.m

@@ -218,14 +218,14 @@ function printHeaderExtraColumns(logFile)
         if any(isnan(data))
             warning('saveEventsFile:missingData', ...
                 'Missing some %s data for this event.', namesExtraColumns{iExtraColumn});
-            
+
             if cfg.verbose
                 disp(logFile(iEvent));
             end
-            
+
         elseif all(isnan(data))
             warning('Missing %s data for this event.', namesExtraColumns{iExtraColumn});
-            
+
             if cfg.verbose
                 disp(logFile(iEvent));
             end

tests/test_saveEventsFileSave.m

@@ -7,32 +7,32 @@
 end
 
 function test_saveEventsFileSaveBasic()
-    
+
     %% set up
-    
+
     [cfg, logFile] = setUp();
-    
+
     % create the events file and header
     logFile = saveEventsFile('open', cfg, logFile);
-    
+
     % ROW 2: normal events : all info is there
     logFile(1, 1).onset = 2;
     logFile(end, 1).trial_type = 'motion_up';
     logFile(end, 1).duration = 3;
     logFile(end, 1).Speed = 2;
     logFile(end, 1).is_Fixation = true;
     logFile(end, 1).LHL24 = 1:12;
-    
+
     logFile = saveEventsFile('save', cfg, logFile);
-    
+
     % close the file
     saveEventsFile('close', cfg, logFile);
-    
+
     %% test
-    
+
     % check the extra columns of the header and some of the content
     content = getFileContent(cfg, logFile);
-    
+
     % event 1/ ROW 2: check that values are entered correctly
     assertEqual(content{1}{2}, sprintf('%f', 2));
     assertEqual(content{3}{2}, 'motion_up');
@@ -41,209 +41,208 @@ function test_saveEventsFileSaveBasic()
     assertEqual(content{5}{2}, sprintf('%f', 1));
     assertEqual(content{16}{2}, sprintf('%f', 12));
     assertEqual(content{17}{2}, 'true');
-    
+
 end
 
 function test_saveEventsFileSaveSkipEmptyEvents()
-    
+
     %% set up
-    
+
     [cfg, logFile] = setUp();
-    
+
     cfg.verbose = false;
-    
+
     % create the events file and header
     logFile = saveEventsFile('open', cfg, logFile);
-    
+
     % "empty" events except the last one
     logFile(1, 1).onset = [];
     logFile(end, 1).duration = [];
-    
+
     logFile(2, 1).onset = 1;
     logFile(end, 1).duration = 'test';
-    
+
     logFile(3, 1).onset = 1;
     logFile(end, 1).duration = nan;
-    
+
     logFile(4, 1).onset = 'test';
     logFile(end, 1).duration = 1;
-    
+
     logFile(5, 1).onset = nan;
     logFile(end, 1).duration = 1;
-    
+
     logFile(6, 1).onset = 1;
     logFile(end, 1).duration = 1;
-    
-    assertWarning(@()saveEventsFile('save', cfg, logFile), 'saveEventsFile:emptyEvent')
-    
+
+    assertWarning(@()saveEventsFile('save', cfg, logFile), 'saveEventsFile:emptyEvent');
+
     saveEventsFile('save', cfg, logFile);
-    
+
     % close the file
     saveEventsFile('close', cfg, logFile);
-    
+
     %% test
-    
+
     % check the extra columns of the header and some of the content
     content = getFileContent(cfg, logFile);
-    
+
     % event 4-5 / ROW 5-6: skip empty events
-    assertTrue(isequal(size(content{1},1), 2));
+    assertTrue(isequal(size(content{1}, 1), 2));
     assertTrue(~isequal(content{1}{1}, sprintf('%f', 1)));
-    
+
 end
 
 function test_saveEventsFileSaveMissingInfo()
-    
+
     %% set up
-    
+
     [cfg, logFile] = setUp();
-    
+
     % create the events file and header
     logFile = saveEventsFile('open', cfg, logFile);
-    
+
     % ROW 1: missing info (speed, LHL24)
     logFile(1, 1).onset = 3;
     logFile(end, 1).trial_type = 'static';
     logFile(end, 1).duration = 4;
     logFile(end, 1).is_Fixation = false;
-    
+
     % ROW 2: missing info (trial_type is missing and speed is empty)
     logFile(2, 1).onset = 4;
     logFile(end, 1).duration = 2;
     logFile(end, 1).Speed = [];
     logFile(end, 1).is_Fixation = true;
     logFile(end, 1).LHL24 = 1:12;
-    
+
     saveEventsFile('save', cfg, logFile);
-    
+
     % close the file
     saveEventsFile('close', cfg, logFile);
-    
+
     %% test
-    
+
     % check the extra columns of the header and some of the content
     content = getFileContent(cfg, logFile);
-    
+
     % event 2 / ROW 3: missing info replaced by n/a
     assertEqual(content{4}{2}, 'n/a');
     assertEqual(content{5}{2}, 'n/a');
     assertEqual(content{16}{2}, 'n/a');
     assertEqual(content{17}{2}, 'false');
-    
+
     % event 3 / ROW 4: missing info (trial_type is missing and speed is empty)
     assertEqual(content{3}{3}, 'n/a');
     assertEqual(content{4}{3}, 'n/a');
-    
+
 end
 
 function test_saveEventsFileSaveArraySize()
-    
+
     %% set up
-    
+
     [cfg, logFile] = setUp();
-    
+
     cfg.verbose = false;
-    
+
     % create the events file and header
     logFile = saveEventsFile('open', cfg, logFile);
-    
+
     % ROW 1: missing info (array is too short)
     logFile(1, 1).onset = 5;
     logFile(end, 1).trial_type = 'jazz';
     logFile(end, 1).duration = 3;
     logFile(end, 1).LHL24 = rand(1, 10);
-    
-    assertWarning(@()saveEventsFile('save', cfg, logFile), 'saveEventsFile:missingData')
-    
+
+    assertWarning(@()saveEventsFile('save', cfg, logFile), 'saveEventsFile:missingData');
+
     saveEventsFile('save', cfg, logFile);
-    
+
     % ROW 2: too much info (array is too long)
     logFile(1, 1).onset = 5;
     logFile(end, 1).trial_type = 'blues';
     logFile(end, 1).duration = 3;
     logFile(end, 1).LHL24 = rand(1, 15);
-    
-    assertWarning(@()saveEventsFile('save', cfg, logFile), 'saveEventsFile:arrayTooLong')
-    
+
+    assertWarning(@()saveEventsFile('save', cfg, logFile), 'saveEventsFile:arrayTooLong');
+
     saveEventsFile('save', cfg, logFile);
-    
+
     % close the file
     saveEventsFile('close', cfg, logFile);
-    
+
     %% test
     content = getFileContent(cfg, logFile);
-    
+
     % check values entered properly
     assertEqual(content{15}{2}, 'n/a');
     assertEqual(content{16}{2}, 'n/a');
-    
+
 end
 
 function test_saveEventsFileSaveErrors()
-    
+
     %% set up
-    
+
     cfg = struct();
     logFile = struct();
-    
+
     assertExceptionThrown(@()saveEventsFile('error', cfg, logFile), ...
         'saveEventsFile:unknownActionType');
-    
+
     assertExceptionThrown(@()saveEventsFile('save', cfg, logFile), ...
         'saveEventsFile:missingFileID');
-    
+
     [cfg, logFile] = setUp();
-    
+
     logFile = saveEventsFile('open', cfg, logFile);
-    
+
     % ROW 1: missing info (array is too short)
     logFile(1, 2).onset = 5;
     logFile(end, end).trial_type = 'jazz';
     logFile(end, end).duration = 3;
     logFile(end, end).LHL24 = rand(1, 10);
-    
+
     assertExceptionThrown(@()saveEventsFile('save', cfg, logFile), ...
         'saveEventsFile:wrongLogSize');
-    
-    
+
 end
 
 function [cfg, logFile] = setUp()
-    
+
     outputDir = fullfile(fileparts(mfilename('fullpath')), '..', 'output');
-    
+
     cfg.verbose = true;
-    
+
     cfg.subject.subjectNb = 1;
     cfg.subject.runNb = 1;
-    
+
     cfg.task.name = 'testtask';
-    
+
     cfg.dir.output = outputDir;
-    
+
     cfg.testingDevice = 'mri';
-    
+
     cfg = createFilename(cfg);
-    
+
     logFile.extraColumns.Speed.length = 1;
     logFile.extraColumns.LHL24.length = 12;
     logFile.extraColumns.is_Fixation.length = 1;
-    
+
 end
 
 function content = getFileContent(cfg, logFile)
-    
+
     % check the extra columns of the header and some of the content
     nbExtraCol = ...
         logFile(1).extraColumns.Speed.length + ...
         logFile(1).extraColumns.LHL24.length + ...
         logFile(1).extraColumns.is_Fixation.length;
-    
+
     funcDir = fullfile(cfg.dir.outputSubject, cfg.fileName.modality);
-    
+
     eventFilename = cfg.fileName.events;
-    
+
     FID = fopen(fullfile(funcDir, eventFilename), 'r');
     content = textscan(FID, repmat('%s', 1, nbExtraCol + 3), 'Delimiter', '\t', 'EndOfLine', '\n');
-    
-end
+
+end