mh autofix

Author: Remi-Gau

src/subfun/askForGroupAndOrSession.m

@@ -1,19 +1,19 @@
 function cfg = askForGroupAndOrSession(cfg)
-    
+
     askGrpSess = [true true];
-    
+
     if isfield(cfg, 'subject') && ...
             isfield(cfg.subject, 'askGrpSess') && ...
             ~isempty(cfg.subject.askGrpSess)
 
         askGrpSess = cfg.subject.askGrpSess;
 
     end
-    
+
     if numel(askGrpSess) < 2
         askGrpSess(2) = 1;
     end
-    
+
     cfg.subject.askGrpSess = askGrpSess;
-    
-end
+
+end

src/subfun/askUserCli.m

@@ -3,24 +3,24 @@
     %
     % command line interface to ask questions to user
     %
-    
+
     for iQuestion = 1:size(questions.questionsToAsk, 1)
-        
-        if ~isempty(questions.questionsToAsk{iQuestion,1})
-            
+
+        if ~isempty(questions.questionsToAsk{iQuestion, 1})
+
             thisResponse = ...
-                input(['\n' questions.questionsToAsk{iQuestion,1}], 's'); %#ok<*AGROW>
-            
-            if questions.questionsToAsk{iQuestion,2}
+                input(['\n' questions.questionsToAsk{iQuestion, 1}], 's'); %#ok<*AGROW>
+
+            if questions.questionsToAsk{iQuestion, 2}
                 thisResponse = checkInput(thisResponse, questions);
             end
-            
+
             responses{iQuestion, 1} = thisResponse;
-            
+
         end
-        
+
     end
-    
+
 end
 
 function input2check = checkInput(input2check, questions)
@@ -29,5 +29,5 @@
     while ~isPositiveInteger(input2check)
         input2check = str2double(input(questions.mustBePositiveInteger, 's'));
     end
-    
+
 end

src/subfun/askUserGui.m

@@ -1,43 +1,42 @@
 function responses = askUserGui(questions, responses)
-    
+
     % boolean for which question should be asked
-    isQuestionToAsk = ~cellfun('isempty', questions.questionsToAsk(:,1));
-    
+    isQuestionToAsk = ~cellfun('isempty', questions.questionsToAsk(:, 1));
+
     responses = cellstr(string(responses(isQuestionToAsk)));
-    
+
     responses = askQuestionsGui(questions, responses, isQuestionToAsk);
-    
+
     % keep asking the question till we get a positive integer value for each
     for iQuestion = 1:size(questions.questionsToAsk)
-        questions.questionsToAsk{iQuestion} = sprintf('%s %s\n %s',...
+        questions.questionsToAsk{iQuestion} = sprintf('%s %s\n %s', ...
             '\color{red}', ...
             questions.questionsToAsk{iQuestion}, ...
             questions.mustBePositiveInteger);
     end
-    
-    while 1 
+
+    while 1
         isQuestionToAsk = getIsQuestionToAsk(questions, responses);
         if all(~isQuestionToAsk)
             break
         end
         responses = askQuestionsGui(questions, responses, isQuestionToAsk);
     end
-    
+
 end
 
 function resp = askQuestionsGui(quest, resp, isQuestionToAsk)
-    
+
     opts.Interpreter = 'tex';
-    
+
     fieldDim = repmat([1 50], sum(isQuestionToAsk), 1);
-    
-    currentResp = inputdlg(quest.questionsToAsk(isQuestionToAsk, 1),...
+
+    currentResp = inputdlg(quest.questionsToAsk(isQuestionToAsk, 1), ...
         'Subject info', ...
         fieldDim, ...
         resp(isQuestionToAsk), ...
         opts);
-    
+
     resp(isQuestionToAsk) = currentResp;
-    
-end
 
+end

src/subfun/createQuestionList.m

@@ -1,34 +1,34 @@
 function questions = createQuestionList(cfg)
-    
+
     cfg = askForGroupAndOrSession(cfg);
-    
+
     questions.group = 'Enter subject group (leave empty if none): ';
     questions.subject = 'Enter subject number (1-999): ';
     questions.session = 'Enter the session number (i.e day ; 1-999): ';
     questions.run = 'Enter the run number (1-999): ';
     questions.mustBePositiveInteger = 'Please enter a positive integer: ';
     % questions.questionsToAsk is a cell array : second column is a boolean
     % set to true if we must run inputCheck on the response
-    questions.questionsToAsk = cell(4,2);
-    
+    questions.questionsToAsk = cell(4, 2);
+
     % subject group
     if cfg.subject.askGrpSess(1)
         questions.questionsToAsk{1, 1} = questions.group;
         questions.questionsToAsk{1, 2} = false;
     end
-    
+
     % the subject number
     questions.questionsToAsk{2, 1} = questions.subject;
     questions.questionsToAsk{2, 2} = true;
-    
+
     % the session number
     if  cfg.subject.askGrpSess(2)
         questions.questionsToAsk{3, 1} = questions.session;
         questions.questionsToAsk{3, 2} = true;
     end
-    
+
     % the run number
     questions.questionsToAsk{4, 1} = questions.run;
     questions.questionsToAsk{4, 2} = true;
-    
-end
+
+end

src/subfun/getIsQuestionToAsk.m

@@ -1,10 +1,10 @@
 function isQuestionToAsk = getIsQuestionToAsk(questions, responses)
 
-    isQuestionToAsk = cell2mat(questions.questionsToAsk(:,2));
+    isQuestionToAsk = cell2mat(questions.questionsToAsk(:, 2));
     for j = 1:size(isQuestionToAsk, 1)
         input2check = str2double(responses{j});
-        isQuestionToAsk(j,2) = ~isPositiveInteger(input2check);
+        isQuestionToAsk(j, 2) = ~isPositiveInteger(input2check);
     end
     isQuestionToAsk = all(isQuestionToAsk, 2);
-    
-end
+
+end

src/subfun/isPositiveInteger.m

@@ -3,12 +3,12 @@
     %
     % works on column vector of values
     %
-    
-    trueOrFalse = ~any( [ ...
+
+    trueOrFalse = ~any([ ...
         ~isnumeric(input2check), ...
         isnan(input2check), ...
         fix(input2check) ~= input2check, ...
         input2check < 0 ...
         ]);
-    
-end
+
+end

src/subfun/setDefaultResponses.m

@@ -1,25 +1,25 @@
 function [cfg, responses] = setDefaultResponses(cfg)
-    
+
     if nargin < 1
         cfg = struct('debug', []);
     end
-    
+
     if ~isfield(cfg, 'debug') || isempty(cfg.debug)
         cfg.debug.do = false;
     end
-    
-    responses{1,1} = ''; % subjectGrp
-    responses{2,1} = ''; % subjectNb
-    responses{3,1} = 1; % session
-    responses{4,1} = ''; % run
-    
+
+    responses{1, 1} = ''; % subjectGrp
+    responses{2, 1} = ''; % subjectNb
+    responses{3, 1} = 1; % session
+    responses{4, 1} = ''; % run
+
     if cfg.debug.do
-        
-        responses{1,1} = 'ctrl';
-        responses{2,1} = 666;
-        responses{3,1} = 666;
-        responses{4,1} = 666;
-        
+
+        responses{1, 1} = 'ctrl';
+        responses{2, 1} = 666;
+        responses{3, 1} = 666;
+        responses{4, 1} = 666;
+
     end
-    
-end
+
+end

src/userInputs.m

@@ -9,28 +9,28 @@
     %    - the first value set to false will skip asking for the participants
     %    group
     %    - the second value set to false will skip asking for the session
-    
+
     if nargin < 1
         cfg = struct('debug', []);
     end
-    
+
     [cfg, responses] = setDefaultResponses(cfg);
-    
+
     if ~cfg.debug.do
-        
+
         questions = createQuestionList(cfg);
-        
-%         try
-            responses = askUserGui(questions, responses);
-%         catch
-%             responses = askUserCli(questions, responses);
-%         end
-        
+
+        %         try
+        responses = askUserGui(questions, responses);
+        %         catch
+        %             responses = askUserCli(questions, responses);
+        %         end
+
     end
-    
-    cfg.subject.subjectGrp = responses{1,1};
-    cfg.subject.subjectNb = responses{2,1};
-    cfg.subject.sessionNb = responses{3,1};
-    cfg.subject.runNb = responses{4,1};
-    
-end
+
+    cfg.subject.subjectGrp = responses{1, 1};
+    cfg.subject.subjectNb = responses{2, 1};
+    cfg.subject.sessionNb = responses{3, 1};
+    cfg.subject.runNb = responses{4, 1};
+
+end

tests/test_askForGroupAndOrSession.m

@@ -11,42 +11,42 @@ function test_askForGroupAndOrSessionBasic()
     %% set up
     cfg = struct();
     cfg = askForGroupAndOrSession(cfg);
-    
+
     expectedStructure = struct('subject', struct('askGrpSess', [true true]));
-    
-    assertEqual(expectedStructure, cfg)
-    
+
+    assertEqual(expectedStructure, cfg);
+
 end
 
 function test_askForGroupAndOrSessionNoGroup()
 
     cfg.subject.askGrpSess = 0;
     cfg = askForGroupAndOrSession(cfg);
-    
+
     expectedStructure = struct('subject', struct('askGrpSess', [false true]));
-    
-    assertEqual(expectedStructure, cfg)
-    
+
+    assertEqual(expectedStructure, cfg);
+
 end
 
 function test_askForGroupAndOrSessionNoGroupNoSession()
 
     cfg.subject.askGrpSess = [0 0];
     cfg = askForGroupAndOrSession(cfg);
-    
+
     expectedStructure = struct('subject', struct('askGrpSess', [false false]));
-    
-    assertEqual(expectedStructure, cfg)
-    
+
+    assertEqual(expectedStructure, cfg);
+
 end
 
 function test_askForGroupAndOrSessionNoSession()
 
     cfg.subject.askGrpSess = [1 0];
     cfg = askForGroupAndOrSession(cfg);
-    
+
     expectedStructure = struct('subject', struct('askGrpSess', [true false]));
-    
-    assertEqual(expectedStructure, cfg)
-    
-end
+
+    assertEqual(expectedStructure, cfg);
+
+end

tests/test_createBoldJson.m

@@ -38,4 +38,4 @@ function test_createBoldJsonBasic()
     %% test
     assertTrue(exist(fullfile(funcDir, eventFilename), 'file') == 2);
 
-end
+end