mh autofix

Author: Remi-Gau

manualTests/test_makeRawDataset.m

@@ -126,9 +126,9 @@ function test_makeRawDataset()
 
     %% actually do the conversion of the source data thus created
     clear;
-    
+
     outputDir = fullfile(fileparts(mfilename('fullpath')), 'output');
     cfg.dir.output = outputDir;
     convertSourceToRaw(cfg);
-    
+
 end

src/convertSourceToRaw.m

@@ -41,7 +41,3 @@ function convertSourceToRaw(cfg)
     end
 
 end
-
-
-
-

src/subfun/parseFunc.m

@@ -17,7 +17,7 @@ function parseFunc(rawDir, subjName, sesName)
             sprintf('^%s.*_task-.*_bold_date-.*$', subjName));
 
         removeDateSuffix(filenames, subjectPath);
-        
+
         % do stim
         filenames = file_utils('List', subjectPath, ...
             sprintf('^%s.*_task-.*_stim_date-.*tsv$', subjName));
@@ -37,9 +37,9 @@ function compressFiles(filenames, subjectPath)
     end
 
     for i = 1:numel(filenames)
-        
-        gzip(fullfile(subjectPath, filenames{i}))
-        delete(fullfile(subjectPath, filenames{i}))
+
+        gzip(fullfile(subjectPath, filenames{i}));
+        delete(fullfile(subjectPath, filenames{i}));
 
     end
-end
+end

src/subfun/removeDateSuffix.m

@@ -2,32 +2,30 @@ function removeDateSuffix(filenames, subjectPath)
     % removeDateSuffix(filenames, subjectPath)
     %
     %
-    
+
     if isempty(filenames)
         filenames = {};
     else
         filenames = cellstr(filenames);
     end
-    
+
     for i = 1:numel(filenames)
-        
+
         [~, name, ext] = fileparts(filenames{i});
-        
+
         if strcmp(ext, '.gz')
             [~, name, ext2] = fileparts(name);
             ext = [ext2, ext]; %#ok<AGROW>
         end
-        
+
         [parts, ~] = regexp(name, '(?:_date-)+', 'split', 'match');
-        
+
         % remove suffix file if there was one
         if ~strcmp(filenames{i}, [parts{1} ext])
             movefile(fullfile(subjectPath, filenames{i}), ...
                 fullfile(subjectPath, [parts{1} ext]));
         end
-        
+
     end
-    
-    
-    
-end
+
+end

tests/test_removeDateSuffix.m

@@ -6,18 +6,17 @@
     initTestSuite;
 end
 
-
 function test_removeDateSuffixBasic()
 
     %% set up
     cfg.dir.output = fullfile(fileparts(mfilename('fullpath')), '..', 'output');
-    
+
     % clean up
     if isdir(cfg.dir.output)
         rmdir(cfg.dir.output, 's');
     end
     [~, ~, ~] = mkdir(cfg.dir.output);
-    
+
     % TODO
     % make sure we use the default date parameter (to implement?)
     % cfg = checkCFG(cfg);
@@ -30,7 +29,7 @@ function test_removeDateSuffixBasic()
     eventsName = 'test_events_date-202008050730.tsv';
     stimName = 'test_stim_date-202008050730.tsv';
     stimNameZipped = 'test2_stim_date-202008050730.tsv.gz';
-    
+
     filesToProcess = { ...
         boldName ;
         boldName2 ;
@@ -46,12 +45,12 @@ function test_removeDateSuffixBasic()
             fullfile('..', 'dummyData', 'dummyData.nii.gz'), ...
             fullfile(cfg.dir.output, filesToProcess{iFile}));
     end
-    
+
     %% do stuff
     filenames = file_utils('List', cfg.dir.output, '^test.*$');
 
     removeDateSuffix(filenames, cfg.dir.output);
-    
+
     %% expected data
     expectedBoldName = 'test_bold.nii.gz';
     expectedBoldName2 = 'test2_bold.nii.gz';
@@ -71,9 +70,3 @@ function test_removeDateSuffixBasic()
     assertEqual(exist(fullfile(cfg.dir.output, expectedBoldName), 'file'), 2);
 
 end
-
-
-
-
-
-