Merge pull request #46 from cpp-lln-lab/olf

[ENH] improve roi plotting

Author: Remi-Gau

src/roi/plotDataInRoi.m

@@ -222,7 +222,11 @@ function labelAxis(roiAs, rows, cols, subplotList, roiImages, dataLabel)
       subplot(rows, cols, subplotList(1, i));
 
       bf = bids.File(roiImages{i});
-      title(sprintf('roi: %s', bf.entities.label));
+      desc = '';
+      if isfield(bf.entities, 'desc')
+        desc = sprintf('- desc: %s', bf.entities.desc);
+      end
+      title(sprintf('roi: %s%s', bf.entities.label, desc));
 
       subplot(rows, cols, subplotList(end, i));
 

src/roi/resliceRoiImages.m

@@ -1,10 +1,31 @@
-% (C) Copyright 2021 CPP ROI developers
-
-function reslicedImages = resliceRoiImages(referenceImage, imagesToCheck)
+function [reslicedImages, matlabbatch] = resliceRoiImages(referenceImage, imagesToCheck, dryRun)
+  %
+  % Check if images are in the same orientation and reslice if necessarrry.
+  %
+  % USAGE::
+  %
+  %     reslicedImages = resliceRoiImages(referenceImage, imagesToCheck, dryRun)
+  %
+  % :param referenceImage:
+  % :type referenceImage: path
+  %
+  % :param imagesToCheck:
+  % :type imagesToCheck: path or cellstr
+  %
+  % :param dryRun: Returns the matlabbatch without running it.
+  % :type dryRun: logical
+  %
+  % (C) Copyright 2021 CPP ROI developers
 
   % TODO
   % - allow option to binarize output?
 
+  if nargin < 3
+    dryRun = false;
+  end
+
+  matlabbatch = {};
+
   % check if files are in the same space
   % if not we reslice the ROI to have the same resolution as the data image
   sts = checkRoiOrientation(referenceImage, imagesToCheck);
@@ -13,9 +34,11 @@
 
   else
 
-    matlabbatch = {};
     matlabbatch = setBatchReslice(matlabbatch, referenceImage, imagesToCheck);
-    spm_jobman('run', matlabbatch);
+
+    if ~dryRun
+      spm_jobman('run', matlabbatch);
+    end
 
     basename = spm_file(imagesToCheck, 'basename');
     reslicedImages = spm_file(imagesToCheck, 'basename', ...