Merge remote-tracking branch 'origin/main' into dev

Author: Remi-Gau

.github/dependabot.yml

@@ -0,0 +1,13 @@
+# Documentation
+# https://docs.github.com/en/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+version: 2
+updates:
+  - package-ecosystem: 'github-actions'
+    directory: '/'
+    schedule:
+      interval: 'monthly'
+
+  - package-ecosystem: 'gitsubmodule'
+    directory: '/'
+    schedule:
+      interval: 'monthly'

.github/workflows/miss_hit.yml

@@ -31,7 +31,7 @@ jobs:
         fetch-depth: 1
 
     - name: Set up Python
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v4
       with:
         python-version: 3.9
 

.github/workflows/run_tests_matlab.yml

@@ -25,7 +25,7 @@ jobs:
 
     steps:
       - name: Install MATLAB
-        uses: matlab-actions/setup-matlab@v1.0.1
+        uses: matlab-actions/setup-matlab@v1.2.0
         with:
           # MATLAB release to set up R2020a
           release: R2020a
@@ -49,7 +49,7 @@ jobs:
         run: make install_dev
 
       - name: Run commands
-        uses: matlab-actions/run-command@v1.0.1
+        uses: matlab-actions/run-command@v1.1.0
         with:
           command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run tests_matlab;
 
@@ -59,7 +59,7 @@ jobs:
           bash <(curl -s https://codecov.io/bash)
 
       - name: Code coverage
-        uses: codecov/codecov-action@v1
+        uses: codecov/codecov-action@v3
         with:
           file: coverage.xml # optional
           flags: unittests # optional

.github/workflows/update-contributors.yml

@@ -3,7 +3,7 @@ name: allcontributors-auto-detect
 on:
   schedule:
     # Run nightly 1am
-    - cron: 0 1 * * *
+    - cron: 0 1 1 * *
 
   # You can also have it check for changes on each push to master
   push:
@@ -39,12 +39,12 @@ jobs:
 
       - name: Create Pull Request
         id: cpr
-        uses: peter-evans/create-pull-request@v3
+        uses: peter-evans/create-pull-request@v4
         with:
-          commit-message: BIDS schema update
+          commit-message: update tributors
           base: main
           delete-branch: true
-          title: '[BOT] update git submodules'
+          title: '[BOT] update tributors'
           body: 'done via this [GitHub Action](https://github.com/cpp-lln-lab/CPP_ROI/blob/main/.github/workflows/update-contributors.yml)'
 
       - name: Check outputs

.github/workflows/validate_cff.yml

@@ -25,7 +25,7 @@ jobs:
         fetch-depth: 1
 
     - name: Set up Python
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v4
       with:
         python-version: 3.9
 

.pre-commit-config.yaml

@@ -28,7 +28,7 @@ repos:
       additional_dependencies: [miss_hit]
 
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.2.0
+  rev: v4.3.0
   hooks:
     - id: trailing-whitespace
     - id: end-of-file-fixer