infra - add tools to help local testing

Author: Remi-Gau

.github/workflows/run_tests_matlab.yml

@@ -5,7 +5,6 @@ on:
     branches:
       - dev
       - main
-      - master
   pull_request:
     branches: ['*']
   schedule:
@@ -41,8 +40,7 @@ jobs:
           git clone https://github.com/MOcov/MOcov.git --depth 1
 
       - name: Add bids-matlab
-        run: |
-          git clone https://github.com/bids-standard/bids-matlab.git --depth 1
+        run: make install_dev
 
       - name: Run commands
         uses: matlab-actions/[email protected]

.gitignore

@@ -9,13 +9,6 @@
 
 *.html
 
-# files in the demo folder related to running the demo analysis
-# demos/roi
-
-atlas/visual_topography_probability_atlas/
-
-# test folder and dummy data
-
 # ignore content of the build folder of the doc
 docs/build/*
 
@@ -25,8 +18,17 @@ envs/*
 # visual studio code stuff
 .vscode
 
+# files in the demo folder related to running the demo analysis
+# demos/roi
+
+atlas/visual_topography_probability_atlas/
+
 demos/*/*.json
 demos/*/*/*.json
 demos/*/derivatives
 
 atlas/*.json
+
+#for testing
+coveragage_html
+lib/bids-matlab

Makefile

@@ -0,0 +1,6 @@
+.PHONY: clean install_dev
+
+clean:
+	rm -rf coverage*
+install_dev:
+	git clone https://github.com/bids-standard/bids-matlab.git --branch dev --depth 1 lib/bids-matlab

run_tests.m

@@ -6,19 +6,25 @@
 
 spm('defaults', 'fMRI');
 
-testFolder = fullfile(fileparts(mfilename('fullpath')), 'tests');
+thisDir = fullfile(fileparts(mfilename('fullpath')));
+
+testFolder = fullfile(thisDir, 'tests');
 
 addpath(fullfile(testFolder, 'utils'));
-addpath(fullfile(fileparts(mfilename('fullpath')), 'atlas'));
+addpath(fullfile(thisDir, 'atlas'));
+
+if isdir(fullfile(thisDir, 'lib', 'bids-matlab'))
+  addpath(fullfile(thisDir, 'lib', 'bids-matlab'));
+end
 
-folderToCover = fullfile(testFolder, '..', 'src');
+folderToCover = fullfile(thisDir, 'src');
 
 success = moxunit_runtests( ...
                            testFolder, ...
                            '-verbose', '-recursive', '-with_coverage', ...
                            '-cover', folderToCover, ...
                            '-cover_xml_file', 'coverage.xml', ...
-                           '-cover_html_dir', fullfile(pwd, 'coverage_html'));
+                           '-cover_html_dir', fullfile(thisDir, 'coverage_html'));
 
 if success
   system('echo 0 > test_report.log');