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Remi-GauRemi-Gau
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update for bids derivatives
1 parent 2a976c9 commit ff17e6a

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‎atlas/space-IXI549Space_desc-neuromorphometrics_dseg.csv‎

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label,ROI
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4,3rd Ventricle
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11,4th Ventricle
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23,Right Accumbens Area
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30,Left Accumbens Area
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31,Right Amygdala
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32,Left Amygdala
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35,Brain Stem
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36,Right Caudate
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37,Left Caudate
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38,Right Cerebellum Exterior
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39,Left Cerebellum Exterior
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40,Right Cerebellum White Matter
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41,Left Cerebellum White Matter
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44,Right Cerebral White Matter
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45,Left Cerebral White Matter
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46,CSF
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47,Right Hippocampus
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48,Left Hippocampus
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49,Right Inf Lat Vent
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50,Left Inf Lat Vent
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51,Right Lateral Ventricle
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52,Left Lateral Ventricle
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55,Right Pallidum
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56,Left Pallidum
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57,Right Putamen
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58,Left Putamen
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59,Right Thalamus Proper
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60,Left Thalamus Proper
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61,Right Ventral DC
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62,Left Ventral DC
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63,Right vessel
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64,Left vessel
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69,Optic Chiasm
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71,Cerebellar Vermal Lobules I-V
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72,Cerebellar Vermal Lobules VI-VII
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73,Cerebellar Vermal Lobules VIII-X
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75,Left Basal Forebrain
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76,Right Basal Forebrain
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100,Right ACgG anterior cingulate gyrus
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101,Left ACgG anterior cingulate gyrus
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102,Right AIns anterior insula
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103,Left AIns anterior insula
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104,Right AOrG anterior orbital gyrus
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105,Left AOrG anterior orbital gyrus
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106,Right AnG angular gyrus
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107,Left AnG angular gyrus
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108,Right Calc calcarine cortex
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109,Left Calc calcarine cortex
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112,Right CO central operculum
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113,Left CO central operculum
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114,Right Cun cuneus
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115,Left Cun cuneus
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116,Right Ent entorhinal area
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117,Left Ent entorhinal area
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118,Right FO frontal operculum
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119,Left FO frontal operculum
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120,Right FRP frontal pole
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121,Left FRP frontal pole
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122,Right FuG fusiform gyrus
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123,Left FuG fusiform gyrus
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124,Right GRe gyrus rectus
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125,Left GRe gyrus rectus
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128,Right IOG inferior occipital gyrus
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129,Left IOG inferior occipital gyrus
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132,Right ITG inferior temporal gyrus
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133,Left ITG inferior temporal gyrus
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134,Right LiG lingual gyrus
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135,Left LiG lingual gyrus
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136,Right LOrG lateral orbital gyrus
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137,Left LOrG lateral orbital gyrus
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138,Right MCgG middle cingulate gyrus
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139,Left MCgG middle cingulate gyrus
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140,Right MFC medial frontal cortex
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141,Left MFC medial frontal cortex
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142,Right MFG middle frontal gyrus
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143,Left MFG middle frontal gyrus
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144,Right MOG middle occipital gyrus
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145,Left MOG middle occipital gyrus
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146,Right MOrG medial orbital gyrus
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147,Left MOrG medial orbital gyrus
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148,Right MPoG postcentral gyrus medial segment
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149,Left MPoG postcentral gyrus medial segment
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150,Right MPrG precentral gyrus medial segment
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151,Left MPrG precentral gyrus medial segment
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152,Right MSFG superior frontal gyrus medial segment
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153,Left MSFG superior frontal gyrus medial segment
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154,Right MTG middle temporal gyrus
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155,Left MTG middle temporal gyrus
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156,Right OCP occipital pole
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157,Left OCP occipital pole
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160,Right OFuG occipital fusiform gyrus
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161,Left OFuG occipital fusiform gyrus
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162,Right OpIFG opercular part of the inferior frontal gyrus
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163,Left OpIFG opercular part of the inferior frontal gyrus
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164,Right OrIFG orbital part of the inferior frontal gyrus
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165,Left OrIFG orbital part of the inferior frontal gyrus
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166,Right PCgG posterior cingulate gyrus
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167,Left PCgG posterior cingulate gyrus
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168,Right PCu precuneus
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169,Left PCu precuneus
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170,Right PHG parahippocampal gyrus
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171,Left PHG parahippocampal gyrus
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172,Right PIns posterior insula
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173,Left PIns posterior insula
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174,Right PO parietal operculum
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175,Left PO parietal operculum
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176,Right PoG postcentral gyrus
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177,Left PoG postcentral gyrus
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178,Right POrG posterior orbital gyrus
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179,Left POrG posterior orbital gyrus
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180,Right PP planum polare
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181,Left PP planum polare
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182,Right PrG precentral gyrus
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183,Left PrG precentral gyrus
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184,Right PT planum temporale
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185,Left PT planum temporale
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186,Right SCA subcallosal area
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187,Left SCA subcallosal area
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190,Right SFG superior frontal gyrus
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191,Left SFG superior frontal gyrus
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192,Right SMC supplementary motor cortex
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193,Left SMC supplementary motor cortex
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194,Right SMG supramarginal gyrus
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195,Left SMG supramarginal gyrus
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196,Right SOG superior occipital gyrus
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197,Left SOG superior occipital gyrus
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198,Right SPL superior parietal lobule
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199,Left SPL superior parietal lobule
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200,Right STG superior temporal gyrus
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201,Left STG superior temporal gyrus
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202,Right TMP temporal pole
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203,Left TMP temporal pole
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204,Right TrIFG triangular part of the inferior frontal gyrus
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205,Left TrIFG triangular part of the inferior frontal gyrus
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206,Right TTG transverse temporal gyrus
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207,Left TTG transverse temporal gyrus

‎atlas/space-IXI549Space_desc-neuromorphometrics_dseg.nii‎

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‎atlas/space-IXI549Space_desc-neuromorphometrics_mask.json‎

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{
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"Description": "RECOMMENDED",
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"Sources": [
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["OPTIONAL"]
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],
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"RawSources": [
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["REQUIRED"]
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],
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"SpatialReference": [
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["REQUIRED if no space entityor if non standard space RECOMMENDED otherwise"]
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],
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"Atlas": [
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["OPTIONAL"]
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],
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"Type": [
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["OPTIONAL"]
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]
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}

‎src/atlas/extractRoiFromAtlas.m‎

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else
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sourceImage = maxProbaFiles(2, :);
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end
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elseif strcmp(atlas, 'neuromorphometrics')
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sourceImage = fullfile(returnAtlasDir(), 'space-IXI549Space_desc-neuromorphometrics_dseg.nii');
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roiLabels = getRoiLabelLookUpTable(atlas);
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end
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roiIdx = strcmp(roiName, roiLabels.ROI);

‎src/atlas/getRoiLabelLookUpTable.m‎

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atlasDir = returnAtlasDir(atlas);
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switch lower(atlas)
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case 'wang'
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roiLabelLUT = spm_load(fullfile(atlasDir, 'LUT.csv'));
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case 'neuromorphometrics'
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roiLabelLUT = spm_load(fullfile(atlasDir, 'LUT.csv'));
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roiLabelLUT = spm_load(fullfile(returnAtlasDir(),...
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'space-IXI549Space_desc-neuromorphometrics_dseg.csv'));
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case 'anatomy_toobox'
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