chore: update pre-commit hooks (#258)

* chore: update pre-commit hooks

updates:
- [github.com/macisamuele/language-formatters-pre-commit-hooks: v2.15.0 → v2.16.0](macisamuele/language-formatters-pre-commit-hooks@v2.15.0...v2.16.0)
- [github.com/asottile/pyupgrade: v3.21.1 → v3.21.2](asottile/pyupgrade@v3.21.1...v3.21.2)
- [github.com/seddonym/import-linter: v2.6 → v2.10](seddonym/import-linter@v2.6...v2.10)
- [github.com/pycqa/isort: 7.0.0 → 8.0.0](PyCQA/isort@7.0.0...8.0.0)
- [github.com/psf/black-pre-commit-mirror: 25.11.0 → 26.1.0](psf/black-pre-commit-mirror@25.11.0...26.1.0)
- [github.com/pre-commit/mirrors-mypy: v1.18.2 → v1.19.1](pre-commit/mirrors-mypy@v1.18.2...v1.19.1)

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -21,24 +21,24 @@ repos:
         args: [--mapping, '4', --sequence, '4', --offset, '0']
 
 -   repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
-    rev: v2.15.0
+    rev: v2.16.0
     hooks:
     -   id: pretty-format-toml
         args: [--autofix, --indent, '4']
 
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v3.21.1
+    rev: v3.21.2
     hooks:
     -   id: pyupgrade
         args: [--py38-plus]
 
 -   repo: https://github.com/seddonym/import-linter
-    rev: v2.6
+    rev: v2.10
     hooks:
     -   id: import-linter
 
 -   repo: https://github.com/pycqa/isort
-    rev: 7.0.0
+    rev: 8.0.0
     hooks:
     -   id: isort
         args: [--settings-path, pyproject.toml]
@@ -51,13 +51,13 @@ repos:
         -   black==24.2.0
 
 -   repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 25.11.0
+    rev: 26.1.0
     hooks:
     -   id: black
         args: [--config=pyproject.toml]
 
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.18.2
+    rev: v1.19.1
     hooks:
     -   id: mypy
         additional_dependencies: [pydantic, numpy, types-Jinja2]

bidsmreye/bidsmreye.py

@@ -1,5 +1,6 @@
 #!/usr/bin/env python
 """Main script."""
+
 from __future__ import annotations
 
 import json

bidsmreye/configuration.py

@@ -35,11 +35,9 @@ def _check_input_dir(self, attribute: str, value: Path) -> None:
             )
 
         if not (value / "dataset_description.json").is_file():
-            raise ValueError(
-                f"""input_dir does not seem to be a valid BIDS dataset.
+            raise ValueError(f"""input_dir does not seem to be a valid BIDS dataset.
 No dataset_description.json found:
-\t{value.absolute()}."""
-            )
+\t{value.absolute()}.""")
 
     output_dir: Path = field(default=None, converter=Path)
 

bidsmreye/generalize.py

@@ -227,7 +227,7 @@ def process_subject(cfg: Config, layout_out: BIDSLayout, subject_label: str) ->
 
         opts = model_opts.get_opts()
 
-        (_, model_inference) = train.train_model(
+        _, model_inference = train.train_model(
             dataset="example_data",
             generators=generators,
             opts=opts,
@@ -241,7 +241,7 @@ def process_subject(cfg: Config, layout_out: BIDSLayout, subject_label: str) ->
         elif log.isEnabledFor(logging.INFO):
             verbose = 1
 
-        (_, _) = train.evaluate_model(
+        _, _ = train.evaluate_model(
             dataset="tmp",
             model=model_inference,
             generators=generators,

bidsmreye/visualize.py

@@ -89,10 +89,8 @@ def collect_group_qc_data(cfg: Config) -> pd.DataFrame | None:
     try:
         qc_data = qc_data[cols]
     except KeyError:
-        log.error(
-            f"""Sidecar files seem to be missing the keys: {cols}.
- To fix try to run the qc at the participant level first."""
-        )
+        log.error(f"""Sidecar files seem to be missing the keys: {cols}.
+ To fix try to run the qc at the participant level first.""")
         return None
 
     return qc_data