improve workflow timing

Author: Remi-Gau

demos/MoAE/spm_2022Oct29_001.png

@@ -39,6 +39,10 @@ function bidsCopyInputFolder(varargin)
 
   opt = loadAndCheckOptions(opt);
 
+  if ~isfield(opt, 'globalStart')
+    opt.globalStart = elapsedTime(opt, 'globalStart');
+  end
+
   cleanCrash();
 
   printWorkflowName('copy data', opt);

demos/MoAE/spm_2022Oct29_002.png

@@ -67,8 +67,6 @@ function bidsRename(opt)
 
   end
 
-  cleanUpWorkflow(opt);
-
 end
 
 function renameFileAndUpdateMetadata(opt, data, newFilename, json, createdFiles)

src/workflows/bidsCopyInputFolder.m

@@ -68,6 +68,8 @@ function bidsCreateVDM(opt)
 
   end
 
+  cleanUpWorkflow(opt);
+
   bidsRename(opt);
 
 end

src/workflows/bidsRename.m

@@ -51,4 +51,6 @@
 
   end
 
+  cleanUpWorkflow(opt);
+
 end

src/workflows/preproc/bidsCreateVDM.m

@@ -68,4 +68,6 @@ function bidsRealignReslice(opt)
 
   end
 
+  cleanUpWorkflow(opt);
+
 end

src/workflows/preproc/bidsGenerateT1map.m

@@ -50,6 +50,8 @@ function bidsRealignUnwarp(opt)
 
   end
 
+  cleanUpWorkflow(opt);
+
   if ~opt.dryRun && opt.rename
     opt = set_spm_2_bids_defaults(opt);
     prefix = get_spm_prefix_list();

src/workflows/preproc/bidsRealignReslice.m

@@ -89,4 +89,6 @@ function bidsRemoveDummies(varargin)
 
   end
 
+  cleanUpWorkflow(opt);
+
 end

src/workflows/preproc/bidsRealignUnwarp.m

@@ -76,6 +76,8 @@ function bidsResliceTpmToFunc(opt)
 
   end
 
+  cleanUpWorkflow(opt);
+
   opt = setRenamingConfig(opt, 'ResliceTpmToFunc');
   bidsRename(opt);