Merge remote-tracking branch 'moh/constrast_spec_update' into remi_constrast-specification

Author: Remi-Gau

model-motionDecodingMultivariate_smdl.json

@@ -5,6 +5,11 @@
     "task": "motionDecoding"
   },
   "Steps": [
+    {
+      "Level": "subject",
+      "AutoContrasts": [],
+      "Contrasts": []
+    },
     {
       "Level": "run",
       "AutoContrasts": ["trial_type.Vis_U", "trial_type.Vis_D", "trial_type.Vis_R", "trial_type.Vis_L","trial_type.Aud_U", "trial_type.Aud_D", "trial_type.Aud_R", "trial_type.Aud_L"]

subfun/BIDS_RFX.m

@@ -211,8 +211,8 @@ function BIDS_RFX(action, mmFunctionalSmoothing, mmConSmoothing, opt, isMVPA)
         end
 
         for iStep = 1:length(model.Steps)
-            if strcmp(model.Steps(iStep).Level, 'dataset')
-                grpLvlCon = model.Steps(iStep).AutoContrasts;
+            if strcmp(model.Steps{iStep}.Level, 'dataset')
+                grpLvlCon = model.Steps{iStep}.AutoContrasts;
                 break
             end
         end

subfun/BIDS_copyRawFolder.m

@@ -62,7 +62,7 @@ function BIDS_copyRawFolder(opt, deleteZippedNii)
         subNumber = group(iGroup).subNumber{iSub} ; % Get the subject ID
 
         % the folder containing the subjects data
-        subFolder = ['sub-', groupName, subNumber ];
+        subFolder = ['sub-', subNumber ];
 
         % copy the whole subject's folder
         copyfile(fullfile(rawDir, subFolder),...

subfun/pmCon.m

@@ -34,7 +34,7 @@
     % check all the steps specified in the model
     for iStep = 1:length(model.Steps)
 
-        Step = model.Steps(iStep);
+        Step = model.Steps{iStep};
 
         switch Step.Level