update test and CI

Author: Remi-Gau

.github/workflows/moxunit.yml

@@ -15,13 +15,19 @@ jobs:
       with:
         submodules: true
         fetch-depth: 1
+
     - name: MOxUnit Action
-      uses: joergbrech/moxunit-action@v1.1
+      uses: joergbrech/moxunit-action@v1.2.0
       with:
         tests: tests
         src: subfun
+        # add CPP_PTB to the path but don't include it the coverage
+        ext: lib/CPP_PTB/src
+        # Octave packages needed
+        pkg: statistics
         with_coverage: true
         cover_xml_file: coverage.xml
+
     - name: Code coverage
       uses: codecov/codecov-action@v1
       with:

.gitignore

@@ -6,6 +6,10 @@
 *.tsv
 *.mat
 
+% tests and coverage
+coverage*
+test_report.log
+
 output
 
 ## virtual env

runTests.m

@@ -0,0 +1,38 @@
+function runTests()
+    %
+    % (C) Copyright 2022 CPP visual motion localizer developers
+
+    % Elapsed time is ??? seconds.
+
+    tic;
+
+    initEnv();
+
+    if bids.internal.is_github_ci
+        fprintf(1, '\nThis is github CI\n');
+    else
+        fprintf(1, '\nThis is not github CI\n');
+    end
+
+    fprintf('\nHome is %s\n', getenv('HOME'));
+
+    warning('OFF');
+
+    folderToCover = fullfile(pwd, 'subfun');
+    testFolder = fullfile(pwd, 'tests');
+
+    success = moxunit_runtests(testFolder, ...
+                               '-verbose', '-recursive', '-with_coverage', ...
+                               '-cover', folderToCover, ...
+                               '-cover_xml_file', 'coverage.xml', ...
+                               '-cover_html_dir', fullfile(pwd, 'coverage_html'));
+
+    if success
+        system('echo 0 > test_report.log');
+    else
+        system('echo 1 > test_report.log');
+    end
+
+    toc;
+
+end

tests/test_expDesign.m

@@ -8,8 +8,6 @@
 
 function test_exDesignBasic()
 
-    initEnv();
-
     cfg.design.motionType = 'translation';
     cfg.design.motionDirections = [0 0 180 180];
     cfg.design.names = {'static'; 'motion'};
@@ -43,8 +41,6 @@ function test_exDesignBasic()
 
 function test_exDesignBasicOtherSetUp()
 
-    initEnv();
-
     cfg.design.motionType = 'translation';
     cfg.design.motionDirections = [0 90 180 270];
     cfg.design.names = {'static'; 'motion'};