mh autofix

Author: Remi-Gau

audioLocTranslational.m

@@ -23,32 +23,31 @@
 cfg = userInputs(cfg);
 cfg = createFilename(cfg);
 
-
 %%  Experiment
 
 % Safety loop: close the screen if code crashes
 try
-    
+
     % % % REFACTOR THIS FUNCTION
     [cfg] = loadAudioFiles(cfg);
 
     %% Init the experiment
     [cfg] = initPTB(cfg);
-    
+
     % % Convert some values from degrees to pixels
     % cfg = deg2Pix('diameterAperture', cfg, cfg);
     % expParameters = deg2Pix('dotSize', expParameters, cfg);
-    
+
     [el] = eyeTracker('Calibration', cfg);
-    
+
     % % % REFACTOR THIS FUNCTION
     [cfg] = expDesign(cfg);
-    
+
     % Prepare for the output logfiles with all
     logFile = saveEventsFile('open', cfg, [], ...
         'direction', 'speed', 'target', 'event', 'block');
 
-%     disp(cfg);
+    %     disp(cfg);
 
     standByScreen(cfg);
 
@@ -64,90 +63,89 @@
     getResponse('start', cfg.keyboard.responseBox);
 
     WaitSecs(cfg.onsetDelay);
-    
+
     %% For Each Block
-    
+
     for iBlock = 1:cfg.numBlocks
-        
-        fprintf('\n - Running Block %.0f \n',iBlock)
-        
+
+        fprintf('\n - Running Block %.0f \n', iBlock);
+
         eyeTracker('StartRecording', cfg);
-        
+
         % For each event in the block
         for iEvent = 1:cfg.numEventsPerBlock
-                        
+
             % Check for experiment abortion from operator
             checkAbort(cfg, cfg.keyboard.keyboard);
-            
+
             % set direction, speed of that event and if it is a target
             thisEvent.trial_type = 'dummy';
-            thisEvent.direction = cfg.designDirections(iBlock,iEvent);
-            thisEvent.speed = cfg.designSpeeds(iBlock,iEvent);
-            thisEvent.target = cfg.designFixationTargets(iBlock,iEvent);
-            
+            thisEvent.direction = cfg.designDirections(iBlock, iEvent);
+            thisEvent.speed = cfg.designSpeeds(iBlock, iEvent);
+            thisEvent.target = cfg.designFixationTargets(iBlock, iEvent);
+
             % play the sounds and collect onset and duration of the event
             [onset, duration] = doAudMot(cfg, thisEvent, cfg.audio.pahandle);
-            
+
             thisEvent.event = iEvent;
             thisEvent.block = iBlock;
             thisEvent.duration = duration;
             thisEvent.onset = onset - cfg.experimentStart;
-            
+
             % Save the events txt logfile
             % we save event by event so we clear this variable every loop
             thisEvent.fileID = logFile.fileID;
-            
+
             saveEventsFile('save', cfg, thisEvent, ...
                 'direction', 'speed', 'target', 'event', 'block');
-            
-            clear thisEvent
-            
-            
+
+            clear thisEvent;
+
             % collect the responses and appends to the event structure for
             % saving in the tsv file
             responseEvents = getResponse('check', cfg.keyboard.responseBox, cfg, ...
                 getOnlyPress);
-            
+
             triggerString = ['trigger'];
             saveResponsesAndTriggers(responseEvents, cfg, logFile, triggerString);
-            
+
             % wait for the inter-stimulus interval
             WaitSecs(cfg.ISI);
-            
+
         end
-        
+
         eyeTracker('StopRecordings', cfg);
-        
+
         WaitSecs(cfg.IBI);
-        
+
     end
-    
+
     % End of the run for the BOLD to go down
     WaitSecs(cfg.endDelay);
-    
+
     % Close the logfiles
     saveEventsFile('close', cfg, logFile);
-    
+
     getResponse('stop', cfg.keyboard.responseBox);
     getResponse('release', cfg.keyboard.responseBox);
-    
-    totalExperimentTime = GetSecs-cfg.experimentStart;
-    
+
+    totalExperimentTime = GetSecs - cfg.experimentStart;
+
     eyeTracker('Shutdown', cfg);
-    
+
     % save the whole workspace
-    matFile = fullfile(cfg.dir.output, strrep(cfg.fileName.events,'tsv', 'mat'));
+    matFile = fullfile(cfg.dir.output, strrep(cfg.fileName.events, 'tsv', 'mat'));
     if IsOctave
         save(matFile, '-mat7-binary');
     else
         save(matFile, '-v7.3');
     end
-    
-    cleanUp()
-    
+
+    cleanUp();
+
 catch
-    
-    cleanUp()
+
+    cleanUp();
     psychrethrow(psychlasterror);
-    
+
 end

getDependencies.m

@@ -1,17 +1,17 @@
 function getDependencies(action)
 
-if nargin<1
-    action = '';
-end
+    if nargin < 1
+        action = '';
+    end
 
-switch action
-    case 'update'
-        % install dependencies
-        mpm install -i mpm-requirements.txt -f -c audio_motion_localizer
-end
+    switch action
+        case 'update'
+            % install dependencies
+            mpm install -i mpm-requirements.txt -f -c audio_motion_localizer;
+    end
 
-% adds them to the path
-mpm_folder = fileparts(which('mpm'));
-addpath(genpath(fullfile(mpm_folder, 'mpm-packages', 'mpm-collections', 'audio_motion_localizer')));
+    % adds them to the path
+    mpm_folder = fileparts(which('mpm'));
+    addpath(genpath(fullfile(mpm_folder, 'mpm-packages', 'mpm-collections', 'audio_motion_localizer')));
 
 end

miss_hit.cfg

@@ -1,5 +1,4 @@
 line_length: 100
 regex_function_name: "[a-z]+(([A-Z]){1}[A-Za-z]+)*"
 suppress_rule: "copyright_notice"
-exclude_dir: "lib"
-exclude_dir: "Visual-loc_radial"
+exclude_dir: "lib"

setParameters.m

@@ -1,23 +1,23 @@
 function cfg = setParameters
-    
+
     % Initialize the parameters and general configuration variables
     cfg = struct();
-    
+
     % by default the data will be stored in an output folder created where the
     % setParamters.m file is
     % change that if you want the data to be saved somewhere else
     cfg.dir.output = fullfile( ...
         fileparts(mfilename('fullpath')), '..', ...
         'output');
-    
+
     %% Debug mode settings
-    
+
     cfg.debug.do = true; % To test the script out of the scanner, skip PTB sync
     cfg.debug.smallWin = false; % To test on a part of the screen, change to 1
     cfg.debug.transpWin = true; % To test with trasparent full size screen
-    
+
     cfg.verbose = false;
-    
+
     %% Engine parameters
 
     cfg.testingDevice = 'pc';
@@ -31,26 +31,23 @@
 
     % MRI settings
     cfg = setMRI(cfg);
-    
+
     cfg.audio.channels = 2;
 
-    
     %% Experiment Design
-    cfg.names              = {'static','motion'};
+    cfg.names              = {'static', 'motion'};
     cfg.possibleDirections = [-1 1]; % 1 motion , -1 static
-    cfg.numBlocks          = size(cfg.possibleDirections,2);
-    cfg.numRepetitions     = 1;      %AT THE MOMENT IT IS NOT SET IN THE MAIN SCRIPT
-
+    cfg.numBlocks          = size(cfg.possibleDirections, 2);
+    cfg.numRepetitions     = 1;      % AT THE MOMENT IT IS NOT SET IN THE MAIN SCRIPT
 
     %% Timing
-    cfg.IBI                = 0; %8;
+    cfg.IBI                = 0; % 8;
     cfg.ISI                = 0.1;    % Time between events in secs
     cfg.onsetDelay         = 1;      % Number of seconds before the motion stimuli are presented
     cfg.endDelay           = 1;      % Number of seconds after the end all the stimuli before ending the run
-    
-    
+
     %% Auditory Stimulation
-    
+
     % expParameters.experimentType    = 'Gratings';  %Dots/Gratings % Visual modality is in RDKs %NOT USED IN THE MAIN SCIPT
     cfg.speedEvent        = 8;       % speed in visual angles
     cfg.numEventsPerBlock = 12;      % Number of events per block (should not be changed)
@@ -76,18 +73,15 @@
     cfg.target.duration = 0.05; % In secs
 
     cfg.extraColumns = {'direction', 'speed', 'target', 'event', 'block', 'keyName'};
-    
-    
-    
-    
+
 end
 
 function cfg = setKeyboards(cfg)
     cfg.keyboard.escapeKey = 'ESCAPE';
     cfg.keyboard.responseKey = {'space', 't'};
     cfg.keyboard.keyboard = [];
     cfg.keyboard.responseBox = [];
-    
+
     if strcmpi(cfg.testingDevice, 'mri')
         cfg.keyboard.keyboard = [];
         cfg.keyboard.responseBox = [];
@@ -98,29 +92,28 @@
     % letter sent by the trigger to sync stimulation and volume acquisition
     cfg.mri.triggerKey = 't';
     cfg.mri.triggerNb = 4;
-    
+
     cfg.mri.repetitionTime = 1.8;
-    
+
     cfg.bids.MRI.Instructions = 'Detect the RED fixation cross';
     cfg.bids.MRI.TaskDescription = [];
-    
-end
 
+end
 
 function cfg = setMonitor(cfg)
-    
+
     % Monitor parameters for PTB
     cfg.color.white = [255 255 255];
     cfg.color.black = [0 0 0];
     cfg.color.red = [255 0 0];
     cfg.color.grey = mean([cfg.color.black; cfg.color.white]);
     cfg.color.background = cfg.color.black;
     cfg.text.color = cfg.color.white;
-    
+
     % Monitor parameters
     cfg.screen.monitorWidth = 50; % in cm
     cfg.screen.monitorDistance = 40; % distance from the screen in cm
-    
+
     if strcmpi(cfg.testingDevice, 'mri')
         cfg.screen.monitorWidth = 50;
         cfg.screen.monitorDistance = 40;