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Merge pull request #13 from marcobarilari/marco_add-submodules
add CPP_PTB/BIDS as submodules
2 parents 0d4abcd + a36227d commit 8a36cac

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‎.gitmodules‎

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[submodule "Visual-loc_translational/subfun/CPP_PTB"]
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path = Visual-loc_translational/subfun/CPP_PTB
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url = https://github.com/cpp-lln-lab/CPP_PTB.git
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[submodule "Visual-loc_translational/subfun/CPP_BIDS"]
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path = Visual-loc_translational/subfun/CPP_BIDS
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url = https://github.com/cpp-lln-lab/CPP_BIDS.git

‎Visual-loc_translational/subfun/CPP_BIDS‎

Submodule CPP_BIDS added at 232ace3

‎Visual-loc_translational/subfun/CPP_PTB‎

Submodule CPP_PTB added at 47b29b6

‎Visual-loc_translational/subfun/eyeTracker.m‎

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function [ el ] = eyeTracker(input, cfg, expParameters)
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if ~cfg.eyeTracker
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el = [];
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else
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switch input
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case 'Calibration'
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%% STEP 2
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% Provide Eyelink with details about the graphics environment
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% and perform some initializations. The information is returned
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% in a structure that also contains useful defaults
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% and control codes (e.g. tracker state bit and Eyelink key values).
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el = EyelinkInitDefaults(cfg.win);
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% calibration has silver background with black targets, sound and smaller
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% targets
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el.backgroundcolour = silver;
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el.msgfontcolour = BlackIndex(w);
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el.calibrationtargetcolour = BlackIndex(w);
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el.calibrationtargetsize = 1;
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el.calibrationtargetwidth = 0.5;
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el.displayCalResults = 1;
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% call this function for changes to the calibration structure to take
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% affect
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EyelinkUpdateDefaults(el);
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%% STEP 3
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% Initialization of the connection with the Eyelink Gazetracker.
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% exit program if this fails.
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% make sure EL is initialized.
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ELinit = Eyelink('Initialize');
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if ELinit~=1 && ~dummymode
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fprintf('Eyelink is not initialized, aborted.\n');
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Eyelink('Shutdown');
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Screen('CloseAll');
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return;
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end
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% make sure we're still connected.
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ELconnection = Eyelink('IsConnected');
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if ELconnection~=1 && ~dummymode
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fprintf('Eyelink is not connected, aborted.\n');
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Eyelink('Shutdown');
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Screen('CloseAll');
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return;
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end
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[el.v, el.vs] = Eyelink('GetTrackerVersion');
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fprintf('Running experiment on a ''%s'' tracker.\n', vs );
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% make sure that we get gaze data from the Eyelink
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Eyelink('Command', 'link_sample_data = LEFT,RIGHT,GAZE,AREA');
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% open file to record data to
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edfFile = [expParameters.outputDir, 'eyetracker', ...
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expParameters.fileName.eyetracker];
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Eyelink('Openfile', edfFile);
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%% STEP 4
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% SET UP TRACKER CONFIGURATION
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% Setting the proper recording resolution, proper calibration type,
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% as well as the data file content;
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Eyelink('command', 'add_file_preamble_text ''Recorded by EyelinkToolbox demo-experiment''');
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% This command is crucial to map the gaze positions from the tracker to
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% screen pixel positions to determine fixation
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Eyelink('command','screen_pixel_coords = %ld %ld %ld %ld', 0, 0, cfg.winWidth-1, cfg.winHeight-1);
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Eyelink('message', 'DISPLAY_COORDS %ld %ld %ld %ld', 0, 0, cfg.winWidth-1, cfg.winHeight-1);
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% % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % %
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% DEFAULT CALIBRATION
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% set calibration type.
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Eyelink('command', 'calibration_type = HV5');
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% you must send this command with value NO for custom calibration
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% you must also reset it to YES for subsequent experiments
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Eyelink('command', 'generate_default_targets = YES');
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% % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % %
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% % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % %
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% % CUSTOM CALIBRATION
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% % (SET MANUALLY THE DOTS COORDINATES, HERE FOR 6 DOTS)
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% Eyelink('command', 'calibration_type = HV5');
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% % you must send this command with value NO for custom calibration
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% % you must also reset it to YES for subsequent experiments
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% Eyelink('command', 'generate_default_targets = NO');
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%
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% % calibration and validation target locations
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% [width, height]=Screen('WindowSize', screenNumber);
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% Eyelink('command','calibration_samples = 6');
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% Eyelink('command','calibration_sequence = 0,1,2,3,4,5');
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% Eyelink('command','calibration_targets = %d,%d %d,%d %d,%d %d,%d %d,%d',...
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% 640,512, ... %width/2,height/2
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% 640,102, ... %width/2,height*0.1
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% 640,614, ... %width/2,height*0.6
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% 128,341, ... %width*0.1,height*1/3
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% 1152,341 ); %width-width*0.1,height*1/3
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%
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% Eyelink('command','validation_samples = 5');
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% Eyelink('command','validation_sequence = 0,1,2,3,4,5');
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% Eyelink('command','validation_targets = %d,%d %d,%d %d,%d %d,%d %d,%d',...
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% 640,512, ... %width/2,height/2
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% 640,102, ... %width/2,height*0.1
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% 640,614, ... %width/2,height*0.6
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% 128,341, ... %width*0.1,height*1/3
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% 1152,341 ); %width-width*0.1,height*1/3
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% % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % % %
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% set parser (conservative saccade thresholds)
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Eyelink('command', 'saccade_velocity_threshold = 35');
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Eyelink('command', 'saccade_acceleration_threshold = 9500');
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% set EDF file contents (not clear what this lines are used for)
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el.vsn = regexp(el.vs,'\d','match'); % wont work on EL
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% enter Eyetracker camera setup mode, calibration and validation
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EyelinkDoTrackerSetup(el);
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% % do a final check of calibration using driftcorrection
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% % You have to hit esc before return.
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% EyelinkDoDriftCorrection(el);
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% % do a final check of calibration using driftcorrection
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% success=EyelinkDoDriftCorrection(el);
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% if success~=1
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% Eyelink('shutdown');
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% Screen('CloseAll');
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% return;
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% end
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case 'StartRecording'
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%% STEP 5
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% EyeLink Start recording the block
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Eyelink('Command', 'set_idle_mode');
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WaitSecs(0.05);
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Eyelink('StartRecording');
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% % here to tag the recording, in the past caused delays during the
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% % presentation so I avoided to use it
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% Eyelink('message',['TRIALID ',num2str(blocks),'_startTrial']);
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% check recording status, stop display if error
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checkrec=Eyelink('checkrecording');
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if(checkrec~=0)
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fprintf('\nEyelink is not recording.\n\n');
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Eyelink('Shutdown');
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Screen('CloseAll');
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return;
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end
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% record a few samples before we actually start displaying
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% otherwise you may lose a few msec of data
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WaitSecs(0.1);
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% HERE START THE STIMALTION OF THE BLOCK
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% to mark the beginning of the trial
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Eyelink('Message', 'SYNCTIME');
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case 'StopRecordings'
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%% STEP 8
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% finish up: stop recording eye-movements,
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% EyeLink Stop recording the block
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Eyelink('Message', 'BLANK_SCREEN');
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% adds 100 msec of data to catch final events
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WaitSecs(0.1);
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% close graphics window, close data file and shut down tracker
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Eyelink('StopRecording');
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case 'Shutdown'
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%% STEP 6
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% At the end of the experiment, save the edf file and shut down connection
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% with Eyelink
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Eyelink('Command', 'set_idle_mode');
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WaitSecs(0.5);
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Eyelink('CloseFile');
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% download data file
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try
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fprintf('Receiving data file ''%s''\n', fileEdf );
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status=Eyelink('ReceiveFile');
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if status > 0
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fprintf('ReceiveFile status %d\n', status);
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end
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if 2==exist(fileEdf, 'file')
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fprintf('Data file ''%s'' can be found in ''%s''\n', fileEdf, pwd );
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end
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catch
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fprintf('Problem receiving data file ''%s''\n', fileEdf );
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end
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Eyelink('shutdown');
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end
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end

‎Visual-loc_translational/subfun/wait4Trigger.m‎

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function wait4Trigger(Cfg)
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if strcmp(Cfg.device,'Scanner')
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fprintf('Waiting for trigger \n');
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DrawFormattedText(Cfg.win,'Waiting For Trigger',...
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'center', 'center', Cfg.textColor);
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Screen('Flip', Cfg.win);
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triggerCounter=0;
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while triggerCounter < Cfg.numTriggers
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[keyIsDown, ~, keyCode, ~] = KbCheck(-1);
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if strcmp(KbName(keyCode),Cfg.triggerKey)
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triggerCounter = triggerCounter+1 ;
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fprintf('Trigger %s \n', num2str(triggerCounter));
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DrawFormattedText(Cfg.win,['Trigger ',num2str(triggerCounter)],'center', 'center', Cfg.textColor);
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Screen('Flip', Cfg.win);
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while keyIsDown
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[keyIsDown, ~, ~, ~] = KbCheck(-1);
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end
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end
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end
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end
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end

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