fix adding CPP BIDS dependency to path

Author: Remi-Gau

.gitignore

@@ -7,6 +7,8 @@
 *.tsv
 *.mat
 
+output
+
 ## virtual env
 env/
 venv/

.pre-commit-config.yaml

@@ -1,31 +1,31 @@
 repos:
 
--   repo: local
+# -   repo: local
 
-    hooks:
+#     hooks:
 
-    - id: mh_style
-      name: mh_style
-      entry: mh_style
-      args: [--process-slx, --fix]
-      files: ^(.*\.(m|slx))$
-      language: python
-      additional_dependencies: [miss_hit_core]
+    # - id: mh_style
+    #   name: mh_style
+    #   entry: mh_style
+    #   args: [--process-slx, --fix]
+    #   files: ^(.*\.(m|slx))$
+    #   language: python
+    #   additional_dependencies: [miss_hit_core]
 
-    - id: mh_metric
-      name: mh_metric
-      entry: mh_metric
-      args: [--ci]
-      files: ^(.*\.(m|slx))$
-      language: python
-      additional_dependencies: [miss_hit_core]
+    # - id: mh_metric
+    #   name: mh_metric
+    #   entry: mh_metric
+    #   args: [--ci]
+    #   files: ^(.*\.(m|slx))$
+    #   language: python
+    #   additional_dependencies: [miss_hit_core]
 
-    - id: mh_lint
-      name: mh_lint
-      entry: mh_lint
-      files: ^(.*\.(m|slx))$
-      language: python
-      additional_dependencies: [miss_hit]
+    # - id: mh_lint
+    #   name: mh_lint
+    #   entry: mh_lint
+    #   files: ^(.*\.(m|slx))$
+    #   language: python
+    #   additional_dependencies: [miss_hit]
 
 - repo: https://github.com/pre-commit/pre-commit-hooks
   rev: v4.0.1

initEnv.m

@@ -100,8 +100,10 @@ function tryInstallFromForge(packageName)
 function addDependencies()
 
     pth = fileparts(mfilename('fullpath'));
-    addpath(genpath(fullfile(pth, 'lib', 'CPP_BIDS', 'src')));
+    addpath(fullfile(pth, 'lib', 'CPP_BIDS'));
     addpath(genpath(fullfile(pth, 'lib', 'CPP_PTB', 'src')));
     addpath(genpath(fullfile(pth, 'subfun')));
 
+    checkCppBidsDependencies()
+
 end